G1470537


Basic Information

Item Value
gene id G1470537
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 60002654 ~ 60004780 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1681925
tattctcGTACATGTTTGCAATGATACATTCACGACAGTAAACCGGTATGTATATATTCCTGCTCACACCAACCGACTTGCTTCACCTTTTCACTGGTTTTCAAAAGAGCTGTTATGTTAAAGCAGCGTATTACAATTTCAGCATTGTCATGCGAGGCGCTAACATTTGTGacacagcctacacacaaaagTTTAATGTATAAATTCTGAGTGTGAGCCATGTATTTTTGTCTGTCCACTAAACCAACAAAACCTGCTGTGTTCCAAATTAAAGTGTTCATGTTACTTTTACTTTGCAGAGAAGGAAAACCTCAACACTGGAGAAGGCACTGGAATTTTAGTTAGGCctgaaaaatgtttttggggacatGAAGGGGACTGTCAAAGTAGGACTGGTGAAGAGTCATACAAGCACCCTGAAACATCTTAATACAGACATCTGGTATAAGACCACAGAACTACTGAGCATGGCACAAACATTTAAAATACACAGACAGCAAAAATCATTGCAAGCACAGGACCCAGAAACATTATCAGAAAGGCCAAAACATGTACTTTATTTTAACTTTTGATCAGACATCTACTAAATCAGTAATTCAATGTCTCACACCCCACTTCTGTTACTATGTCCCACCTGCACCCCCTAAAAATACATGTCCCAGTAGAGAAATGCTAGAACAATCAACAGTAAAAATAGAAATAAACCCCTACTCCTGTAATAACTTCAGGAAGCCggctaaaaacacattttctttagACATCTAAAATGATTTTACACAACATGGGAGATTTTAAAACAAAAGTTAGTGCGTTTCATTCCACAACACCACTACCTGCTTGTAGTTTAGCCATTAAATGGATGTAAAATATAAAAATCAGAACAGGCCCAGTGATTACATAGGTAACATGTTACTGCACTGCTAGCACCCAGACAATGCACTGAATTCTCACTTTAGCCAAGTctcaaatcagacattgaatactCAACTATTACAAACATTTTAGGGGGGGAAAAAAAGCCacaaaaaaaaagtacattagttacaatacatttttaaatgtcaAACTGCAGAATTCTCAAAACATTTAATCTAAATGTGCTCACTAATACAGCAGACcagaaagagaaaaaagaaaatTGCAACAGTCATCTAACACAAACCAGACTAAAGACTAGCCTGCTAGGCGCAAAATCGGTACAAGAACATTCAGACCACTTACAGTATGAAGTGGCTTCTCTCAAACAGGACTACATTCATCAAGCCATGACTGGCCAATGCCATTTCAGCAACATTTGATCGCCACTTCCCACACAGATTTGAGCAAGTTCCCAAAATTGCATTTTTGCTTGCTTGACTTTGGTCCAGATGTTCAATCCATTCATACACAAAAGGATGAATTATGAGTTTGTAAGAGCATAGAGAGAACAGATATTAAGATTGATGCCCACCACATCTAGTCAACTCTAACATTTATATTTGAAGATATCACTCTAAAGCAAgggttcttaaactttttcagcctgggacccaaCTTAGATCTTGTTTTTCTGGGACCCACACTCATGAAAAGATGCACCCTTTTGGGGCCCCTAAGCCTAATTTGGTTAGGTGAGAATGATGCACTCCCTCGACAGCAGAGAGAAATAATTTAGTTTTAAAGTTACATTTCCTAAATTATACAccttttgccatggggcagagagttttgcaaatgtataaaacataggggcggcagggtagcctagtggttagagcgttggactagtaaccggaaggttgcaagcgcaaacccccgagccgacaaggtacaaatctgccgttctgcccctgaacaggcagttaacccactgttcctaggcagtcattgaaaataagaatttgttcttaactgacttgcctggataaataaaaggtcaaaaaatatatatagtgccttgcgaaagtattcggccccc
>TU1681926
tattctcGTACATGTTTGCAATGATACATTCACGACAGTAAACCGGTATGTATATATTCCTGCTCACACCAACCGACTTGCTTCACCTTTTCACTGGTTTTCAAAAGAGCTGTTATGTTAAAGCAGCGTATTACAATTTCAGCATTGTCATGCGAGGCGCTAACATTTGTGacacagcctacacacaaaagTTTAATGTATAAATTCTGAGTGTGAGCCATGTATTTTTGTCTGTCCACTAAACCAACAAAACCTGCTGTGTTCCAAATTAAAGTGTTCATGTTACTTTTACTTTGCAGAGAAGGAAAACCTCAACACTGGAGAAGGCACTGGAATTTTAGTTAGGCctgaaaaatgtttttggggacatGAAGGGGACTGTCAAAGTAGGACTGGTGAAGAGTCATACAAGCACCCTGAAACATCTTAATACAGACATCTGGTATAAGACCACAGAACTACTGAGCATGGCACAAACATTTAAAATACACAGACAGCAAAAATCATTGCAAGCACAGGACCCAGAAACATTATCAGAAAGGCCAAAACATGTACTTTATTTTAACTTTTGATCAGACATCTACTAAATCAGTAATTCAATGTCTCACACCCCACTTCTGTTACTATGTCCCACCTGCACCCCCTAAAAATACATGTCCCAGTAGAGAAATGCTAGAACAATCAACAGTAAAAATAGAAATAAACCCCTACTCCTGTAATAACTTCAGGAAGCCggctaaaaacacattttctttagACATCTAAAATGATTTTACACAACATGGGAGATTTTAAAACAAAAGTTAGTGCGTTTCATTCCACAACACCACTACCTGCTTGTAGTTTAGCCATTAAATGGATGTAAAATATAAAAATCAGAACAGGCCCAGTGATTACATAGGTAACATGTTACTGCACTGCTAGCACCCAGACAATGCACTGAATTCTCACTTTAGCCAAGTctcaaatcagacattgaatactCAACTATTACAAACATTTTAGGGGGGGAAAAAAAGCCacaaaaaaaaagtacattagttacaatacatttttaaatgtcaAACTGCAGAATTCTCAAAACATTTAATCTAAATGTGCTCACTAATACAGCAGACcagaaagagaaaaaagaaaatTGCAACAGTCATCTAACACAAACCAGACTAAAGACTAGCCTGCTAGGCGCAAAATCGGTACAAGAACATTCAGACCACTTACAGTATGAAGTGGCTTCTCTCAAACAGGACTACATTCATCAAGCCATGACTGGCCAATGCCATTTCAGCAACATTTGATCGCCACTTCCCACACAGATTTGAGCAAGTTCCCAAAATTGCATTTTTGCTTGCTTGACTTTGGTCCAGATGTTCAATCCATTCATACACAAAAGGATGAATTATGAGTTTGTAAGAGCATAGAGAGAACAGATATTAAGATTGATGCCCACCACATCTAGTCAACTCTAACATTTATATTTGAAGATATCACTCTAAAGCAAgggttcttaaactttttcagcctgggacccaaCTTAGATCTTGTTTTTCTGGGACCCACACTCATGAAAAGATGCACCCTTTTGGGGCCCCTAAGCCTAATTTGGTTAGGTGAGAATGATGCACTCCCTCGACAGCAGAGAGAAATAATTTAGTTTTAAAGTTACATTTCCTAAATTATACAccttttgccatggggcagagagttttgcaaatgtataaaacataggggcggcagggtagcctagtggttagagcgttggactagtaaccggaaggttgcaagcgcaaacccccgagccgacaaggtacaaatctgccgttctgcccctgaacaggcagttaacccactgttcctaggcagtcattgaaaataagaatttgttcttaactgacttgcctggataaataaaaggtcaaaaaatatatatagtgccttgcgaaagtattcggcccccttgaactttgcaaccttttgccacatttcaggcttcaaacaaagatataagactatttttttgtgaagaatcaacaacaagtgggacacaatcatgaagtggaacgacatttattggatatttcaaactttttcaacaaatcaaaaactgaaaaattgggcgtgcaaaat

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1681925 False 1957 lncRNA 0.39 1 60002654 60004610
TU1681926 True 2127 lncRNA 0.38 1 60002654 60004780

Neighbor

gene id symbol gene type direction distance location
LOC110494251 LOC106565596 coding upstream 115612 59857225 ~ 59887042 (+)
LOC110494250 LOC106565597 coding upstream 332547 59657801 ~ 59670107 (+)
LOC118940557 NA coding upstream 380168 59622361 ~ 59622486 (+)
LOC118940556 NA coding upstream 381218 59621304 ~ 59621436 (+)
LOC118940560 NA coding upstream 382285 59620247 ~ 59620369 (+)
LOC110494255 LOC106565587 coding downstream 58470 60063250 ~ 60078437 (+)
LOC110494256 LOC106565588 coding downstream 73970 60078750 ~ 60095370 (+)
LOC110494259 LOC106565584 coding downstream 240005 60244785 ~ 60247910 (+)
srgap3 srgap3 coding downstream 260699 60265479 ~ 60383800 (+)
rad18 rad18 coding downstream 429146 60433926 ~ 60508595 (+)
G1470550 NA non-coding upstream 1481 60000964 ~ 60001173 (+)
G1470549 NA non-coding upstream 2222 60000062 ~ 60000432 (+)
G1470538 NA non-coding upstream 9255 59991004 ~ 59993399 (+)
G1470533 NA non-coding upstream 21989 59980060 ~ 59980665 (+)
G1470431 NA non-coding upstream 91194 59910408 ~ 59911460 (+)
G1470551 NA non-coding downstream 371 60005151 ~ 60005493 (+)
G1470553 LOC106565589 non-coding downstream 1368 60006148 ~ 60009096 (+)
G1470554 NA non-coding downstream 4988 60009768 ~ 60010601 (+)
G1470555 LOC106565589 non-coding downstream 6306 60011086 ~ 60011323 (+)
G1470556 NA non-coding downstream 7621 60012401 ~ 60012700 (+)
G1469076 NA other upstream 1494769 58507297 ~ 58507885 (+)
G1467219 NA other upstream 2388354 57589865 ~ 57614300 (+)
LOC110494206 LOC108254821 other upstream 2454476 57498305 ~ 57548178 (+)
G1467159 LOC106565433 other upstream 2519065 57478797 ~ 57554480 (+)
G1467031 NA other upstream 2852311 57149303 ~ 57150343 (+)
G1470607 NA other downstream 97112 60101892 ~ 60104007 (+)
G1471723 LOC100380707 other downstream 967698 60972478 ~ 60999063 (+)
LOC110494283 LOC106565563 other downstream 1551539 61555873 ~ 61558328 (+)
G1473171 LOC106581772 other downstream 2693723 62698503 ~ 62698815 (+)
G1473177 NA other downstream 2705559 62710339 ~ 62711136 (+)

Expression


Co-expression Network