G1470557 (LOC106565589)


Basic Information

Item Value
gene id G1470557
gene name LOC106565589
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 60013230 ~ 60013522 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1681957
CCAGTGGGGTCTCGAAATAAGGGGCAGGCGATGGGTTCCAGGTGGGGGGCAccagggggtagagagggtacTGCTGCTGGGGGCTGAACACCTGCTGCATATAGTGGTGTGTAGAGGTGTACTGGGACTGAGACTGGCCCTGCTGGCTGTACACACTGGAGTCCAGTACGCTACGGTAGCCATTCTTTGCAAAGAATGTGTTGATGGCCTTGATACGAG
>TU1681955
GGGGTCTCGAAATAAGGGGCAGGCGATGGGTTCCAGGTGGGGGGCAccagggggtagagagggtacTGCTGCTGGGGGCTGAACACCTGCTGCATATAGTGGTGTGTAGAGGTGTACTGGGACTGAGACTGGCCCTGCTGGCTGTACACACTGGAGTCCAGTACGCTACGGTAGCCATTCTTTGCAAAGAATGTGTTGATGGCCTTGATACGAG
>TU1681956
GGGGTCTCGAAATAAGGGGCAGGCGATGGGTTCCAGGTGGGGGGCAccagggggtagagagggtacTGCTGCTGGGGGCTGAACACCTGCTGCATATAGTGGTGTGTAGAGGTGTACTGGGACTGAGACTGGCCCTGCTGGCTGTACACACTGGAGTCCAGTACGCTACGGTAGCCATTCTTTGCAAAGAATGTGTTGATGGCCTTGATACGAGCCTGGACagaggaaaagagagcgagacagacaggtGGGGcagggagatgtgtgtgtgtgtggaggaatgCAAAG

Function

NR:

description
la-related protein 4-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1681957 False 219 lncRNA 0.57 1 60013230 60013448
TU1681955 False 214 lncRNA 0.57 1 60013235 60013448
TU1681956 True 288 lncRNA 0.57 1 60013235 60013522

Neighbor

gene id symbol gene type direction distance location
LOC110494251 LOC106565596 coding upstream 126188 59857225 ~ 59887042 (+)
LOC110494250 LOC106565597 coding upstream 343123 59657801 ~ 59670107 (+)
LOC118940557 NA coding upstream 390744 59622361 ~ 59622486 (+)
LOC118940556 NA coding upstream 391794 59621304 ~ 59621436 (+)
LOC118940560 NA coding upstream 392861 59620247 ~ 59620369 (+)
LOC110494255 LOC106565587 coding downstream 49728 60063250 ~ 60078437 (+)
LOC110494256 LOC106565588 coding downstream 65228 60078750 ~ 60095370 (+)
LOC110494259 LOC106565584 coding downstream 231263 60244785 ~ 60247910 (+)
srgap3 srgap3 coding downstream 251957 60265479 ~ 60383800 (+)
rad18 rad18 coding downstream 420404 60433926 ~ 60508595 (+)
G1470556 NA non-coding upstream 530 60012401 ~ 60012700 (+)
G1470555 LOC106565589 non-coding upstream 1907 60011086 ~ 60011323 (+)
G1470554 NA non-coding upstream 2629 60009768 ~ 60010601 (+)
G1470553 LOC106565589 non-coding upstream 4134 60006148 ~ 60009096 (+)
G1470551 NA non-coding upstream 7737 60005151 ~ 60005493 (+)
G1470575 NA non-coding downstream 25369 60038891 ~ 60039182 (+)
G1470585 NA non-coding downstream 35691 60049213 ~ 60049467 (+)
G1470586 NA non-coding downstream 36326 60049848 ~ 60050234 (+)
G1470595 NA non-coding downstream 47048 60060570 ~ 60060770 (+)
G1470607 NA non-coding downstream 88696 60101892 ~ 60104007 (+)
G1469076 NA other upstream 1505345 58507297 ~ 58507885 (+)
G1467219 NA other upstream 2398930 57589865 ~ 57614300 (+)
LOC110494206 LOC108254821 other upstream 2465052 57498305 ~ 57548178 (+)
G1467159 LOC106565433 other upstream 2529641 57478797 ~ 57554480 (+)
G1467031 NA other upstream 2862887 57149303 ~ 57150343 (+)
G1471723 LOC100380707 other downstream 958956 60972478 ~ 60999063 (+)
LOC110494283 LOC106565563 other downstream 1542797 61555873 ~ 61558328 (+)
G1473171 LOC106581772 other downstream 2684981 62698503 ~ 62698815 (+)
G1473177 NA other downstream 2696817 62710339 ~ 62711136 (+)

Expression


Co-expression Network