G1470607


Basic Information

Item Value
gene id G1470607
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 60101892 ~ 60104007 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1682011
ATAATGAGGTCTGGAATTCCCTCTTTGCATTATTGATTAGACCGACCGCCCGAGAGAGAgcgatatggagagagagaccaaagAAGAGACAGGAATATTTCACTTGTTGAGTGTATGCTTTGACAATGTAGATCTCGGACACTGGAGGGCGCTATTAGATAGCAGATACTGTATACATTTGACATCTAACGCAAATATCATTCAGTTCCTCACCGTTTTTAGTGGAACTGGACACTGTTTGAAATGCGTTGATGTATTTATAAATACATACCAACAAGAACAGACAGAGACTGATATTTCATTCTGGACTTGTATTTCGTTTTCAGTCAGTAAAGGGAGAACATTGATTCAAAAAGATCATAGACATTTTGCTTTTGCTATGTACAAGAAATGTACAGTTTCTGTGTCACAACTTGGTAGCGCTACATGCGTCAAACAACAGAACACCACAGAGACAAGACCCTAGAAAATAAACTGGTACAAACGAAGCATGAAACTTAAAAAGGACAGCATAGAGGGCTGCGTGAGAGAGCGGAGGGGAGGATACATTCTCTGGAAAAGGGGGGATAATTCTGTTCAGTTTGTGGAGCATTAGCAGTTGGCTGCATCTGTTTGTTTGGTAGTTGGTGATGATGAAATAAAATGATgaatcaaataaataatcaatTGTGCTTTTGGGGACATCATATTTACAACCATGTTGTAAGAATGTTATTAATGAGTCTGTCTGGAGTCCGTGTGTTTGGTTTGGCCAAGTAGCAGGCCCGTTTCAAAGAGATCGCTCAGGGTCCAATAGAGCGCATTTATTTATAACAAAAGAAAATgggaaacaaaaacaaataaaagCCACATTAAATTCATAGAAGTTCATCCAACACCAGAGTGTAAAAGAGAAACAGGAATCATGATCACCATTATGGGTGGTTTGAAATCtgtattatttgaccctgctggtcatctatgaatgtttgaacatcttggagaacaatctggccttaaatggccatgtactcttatagtctccatccggcacagaagaggactggccaaccctcagagcctggttcctctcttggtttcttcctaggttcctgcctttctagggagtttttcctagccaccatgtttctacatctgcattgcatgctgtttggggttttaggctggatttctgtatagcactttgtgaccatttttatttatttttaataaataaagggcttataaatacatttgattgattgattgttaaaTTTGACTTTGCCATGTGTGAATGAGCTCTGCTGTAGTATTTTATGTGGAAGGAGACCCTGACTTTCGTATGATCTATGCATATATCCTCCCATTTCCCCATCTCCAACTTTGTTACAATGTATTGATTGTTATACATCAATATCCTAGACCTAGAAGACTACTAATACAGGAAAGatccaaatacatttttgaatgaaTCATTTGTCTGAATTCAGTTTGTATTTGATTTAATACAGGGGCTGTTGGGCCTTGATGTTATGCACATAATCAGTAGTTACTTAGGGGCCCACTCACTGAAGCAATTACAGAATGTTTTGAACGTGAATTGTGGGGGCTTGAGAACTGAACCCGACTTCAAGGTTAGATGCCACCGAGGACTTTCAGCTATAGAGAACGGGACAGTTGACAAAGTATTCTGAGACGGACAGGCATTATTCCTTGACTCAGTACAGTAGTCCTATTGATTTAATAGCAATCTTCCCTTTGAAAAGGACAGCATGAACATAGATGATAAAGTGATCTATATTTAATATGTGTCTTAAAGGAAGTAATGCTGCTCTGGTAAGTCAGGGTGTAAGGTTTTTCTACCGGGTGTGTGTTCAGAGGTCAAGTGTCCTACAATGCTCTATAATGCTTATTCAATTAATTCCAATACAGACTAAATGGCCCAATATTCCATTGTTAGGGATAAAATAATCTAATAGTGGACTGGCTATGGATATAAAGTGGGGCTGGACTAGGGCCTGAGGTCCACAGGAATAGCTACAGACATCAGGAGGAACAGACAGCTCTCTGCCCAACTGTTCTCTCATCATCTGACTGTCACTAACTAAATGGTTGGTCACACcagcctacccccccc
>TU1682010
TCAGTAAAGGGAGAACATTGATTCAAAAAGATCATAGACATTTTGCTTTTGCTATGTACAAGAAATGTACAGTTTCTGTGTCACAACTTGGTAGCGCTACATGCGTCAAACAACAGAACACCACAGAGACAAGACCCTAGAAAATAAACTGGTACAAACGAAGCATGAAACTTAAAAAGGACAGCATAGAGGGCTGCGTGAGAGAGCGGAGGGGAGGATACATTCTCTGGAAAAGGGGGGATAATTCTGTTCAGTTTGTGGAGCATTAGCAGTTGGCTGCATCTGTTTGTTTGGTAGTTGGTGATGATGAAATAAAATGATgaatcaaataaataatcaatTGTGCTTTTGGGGACATCATATTTACAACCATGTTGTAAGAATGTTATTAATGAGTCTGTCTGGAGTCCGTGTGTTTGGTTTGGCCAAGTAGCAGGCCCGTTTCAAAGAGATCGCTCAGGGTCCAATAGAGCGCATTTATTTATAACAAAAGAAAATgggaaacaaaaacaaataaaagCCACATTAAATTCATAGAAGTTCATCCAACACCAGAGTGTAAAAGAGAAACAGGAATCATGATCACCATTATGGGTGGTTTGAAATCtgtattatttgaccctgctggtcatctatgaatgtttgaacatcttggagaacaatctggccttaaatggccatgtactcttatagtctccatccggcacagaagaggactggccaaccctcagagcctggttcctctcttggtttcttcctaggttcctgcctttctagggagtttttcctagccaccatgtttctacatctgcattgcatgctgtttggggttttaggctggatttctgtatagcactttgtgaccatttttatttatttttaataaataaagggcttataaatacatttgattgattgattgttaaaTTTGACTTTGCCATGTGTGAATGAGCTCTGCTGTAGTATTTTATGTGGAAGGAGACCCTGACTTTCGTATGATCTATGCATATATCCTCCCATTTCC
>TU1682015
TCAGTAAAGGGAGAACATTGATTCAAAAAGATCATAGACATTTTGCTTTTGCTATGTACAAGAAATGTACAGTTTCTGTGTCACAACTTGGTAGCGCTACATGCGTCAAACAACAGAACACCACAGAGACAAGACCCTAGAAAATAAACTGGTACAAACGAAGCATGAAACTTAAAAAGGACAGCATAGAGGGCTGCGTGAGAGAGCGGAGGGGAGGATACATTCTCTGGAAAAGGGGGGATAATTCTGTTCAGTTTGTGGAGCATTAGCAGTTGGCTGCATCTGTTTGTTTGGTAGTTGGTGATGATGAAATAAAATGATgaatcaaataaataatcaatTGTGCTTTTGGGGACATCATATTTACAACCATGTTGTAAGAATGTTATTAATGAGTCTGTCTGGAGTCCGTGTGTTTGGTTTGGCCAAGTAGCAGGCCCGTTTCAAAGAGATCGCTCAGGGTCCAATAGAGCGCATTTATTTATAACAAAAGAAAATgggaaacaaaaacaaataaaagCCACATTAAATTCATAGAAGTTCATCCAACACCAGAGTGTAAAAGAGAAACAGGAATCATGATCACCATTATGGGTGGTTTGAAATCtgtattatttgaccctgctggtcatctatgaatgtttgaacatcttggagaacaatctggccttaaatggccatgtactcttatagtctccatccggcacagaagaggactggccaaccctcagagcctggttcctctcttggtttcttcctaggttcctgcctttctagggagtttttcctagccaccatgtttctacatctgcattgcatgctgtttggggttttaggctggatttctgtatagcactttgtgaccatttttatttatttttaataaataaagggcttataaatacatttgattgattgattgttaaaTTTGACTTTGCCATGTGTGAATGAGCTCTGCTGTAGTATTTTATGTGGAAGGAGACCCTGACTTTCGTATGATCTATGCATATATCCTCCCATTTCCCCATCTCCAACTTTGTTACAATGTATTGATTGTTATACATCAATATCCTAGACCTAGAAGACTACTAATACAGGAAAGatccaaatacatttttgaatgaaTCATTTGTCTGAATTCAGTTTGTATTTGATTTAATACAGGGGCTGTTGGGCCTTGATGTTATGCACATAATCAGTAGTTACTTAGGGGCCCACTCACTGAAGCAATTACAGAATGTTTTGAACGTGAATTGTGGGGGCTTGAGAACTGAACCCGACTTCAAGGTTAGATGCCACCGAGGACTTTCAGCTATAGAGAACGGGACAGTTGACAAAGTATTCTGAGACGGACAGGCATTATTCCTTGACTCAGTACAGTAGTCCTATTGATTTAATAGCAATCTTCCCTTTGAAAAGGACAGCATGAACATAGATGATAAAGTGATCTATATTTAATATGTGTCTTAAAGGAAGTAATGCTGCTCTGGTAAGTCAGGGTGTAAGGTTTTTCTACCGGGTGTGTGTTCAGAGGTCAAGTGTCCTACAATGCTCTATAATGCTTATTCAATTAATTCCAATACAGACTAAATGGCCCAATATTCCATTGTTAGGGATAAAATAATCTAATAGTGGACTGGCTATGGATATAAAGTGGGGCTGGACTAGGGCCTGAGGTCCACAGGAATAGCTACAGACATCAGGAGGAACAGACAGCTCTCTGCCCAACT
>TU1682018
TCAGTAAAGGGAGAACATTGATTCAAAAAGATCATAGACATTTTGCTTTTGCTATGTACAAGAAATGTACAGTTTCTGTGTCACAACTTGGTAGCGCTACATGCGTCAAACAACAGAACACCACAGAGACAAGACCCTAGAAAATAAACTGGTACAAACGAAGCATGAAACTTAAAAAGGACAGCATAGAGGGCTGCGTGAGAGAGCGGAGGGGAGGATACATTCTCTGGAAAAGGGGGGATAATTCTGTTCAGTTTGTGGAGCATTAGCAGTTGGCTGCATCTGTTTGTTTGGTAGTTGGTGATGATGAAATAAAATGATgaatcaaataaataatcaatTGTGCTTTTGGGGACATCATATTTACAACCATGTTGTAAGAATGTTATTAATGAGTCTGTCTGGAGTCCGTGTGTTTGGTTTGGCCAAGTAGCAGGCCCGTTTCAAAGAGATCGCTCAGGGTCCAATAGAGCGCATTTATTTATAACAAAAGAAAATgggaaacaaaaacaaataaaagCCACATTAAATTCATAGAAGTTCATCCAACACCAGAGTGTAAAAGAGAAACAGGAATCATGATCACCATTATGGGTGGTTTGAAATCtgtattatttgaccctgctggtcatctatgaatgtttgaacatcttggagaacaatctggccttaaatggccatgtactcttatagtctccatccggcacagaagaggactggccaaccctcagagcctggttcctctcttggtttcttcctaggttcctgcctttctagggagtttttcctagccaccatgtttctacatctgcattgcatgctgtttggggttttaggctggatttctgtatagcactttgtgaccatttttatttatttttaataaataaagggcttataaatacatttgattgattgattgttaaaTTTGACTTTGCCATGTGTGAATGAGCTCTGCTGTAGTATTTTATGTGGAAGGAGACCCTGACTTTCGTATGATCTATGCATATATCCTCCCATTTCCCCATCTCCAACTTTGTTACAATGTATTGATTGTTATACATCAATATCCTAGACCTAGAAGACTACTAATACAGGAAAGatccaaatacatttttgaatgaaTCATTTGTCTGAATTCAGTTTGTATTTGATTTAATACAGGGGCTGTTGGGCCTTGATGTTATGCACATAATCAGTAGTTACTTAGGGGCCCACTCACTGAAGCAATTACAGAATGTTTTGAACGTGAATTGTGGGGGCTTGAGAACTGAACCCGACTTCAAGGTTAGATGCCACCGAGGACTTTCAGCTATAGAGAACGGGACAGTTGACAAAGTATTCTGAGACGGACAGGCATTATTCCTTGACTCAGTACAGTAGTCCTATTGATTTAATAGCAATCTTCCCTTTGAAAAGGACAGCATGAACATAGATGATAAAGTGATCTATATTTAATATGTGTCTTAAAGGAAGTAATGCTGCTCTGGTAAGTCAGGGTGTAAGGTTTTTCTACCGGGTGTGTGTTCAGAGGTCAAGTGTCCTACAATGCTCTATAATGCTTATTCAATTAATTCCAATACAGACTAAATGGCCCAATATTCCATTGTTAGGGATAAAATAATCTAATAGTGGACTGGCTATGGATATAAAGTGGGGCTGGACTAGGGCCTGAGGTCCACAGGAATAGCTACAGACATCAGGAGGAACAGACAGCTCTCTGCCCAACTGTTCTCTCATCATCTGACTGTCACTAACTAAATGGTTGGTCACACcagcctacccccccc
>TU1682019
TCAGTAAAGGGAGAACATTGATTCAAAAAGATCATAGACATTTTGCTTTTGCTATGTACAAGAAATGTACAGTTTCTGTGTCACAACTTGGTAGCGCTACATGCGTCAAACAACAGAACACCACAGAGACAAGACCCTAGAAAATAAACTGGTACAAACGAAGCATGAAACTTAAAAAGGACAGCATAGAGGGCTGCGTGAGAGAGCGGAGGGGAGGATACATTCTCTGGAAAAGGGGGGATAATTCTGTTCAGTTTGTGGAGCATTAGCAGTTGGCTGCATCTGTTTGTTTGGTAGTTGGTGATGATGAAATAAAATGATgaatcaaataaataatcaatTGTGCTTTTGGGGACATCATATTTACAACCATGTTGTAAGAATGTTATTAATGAGTCTGTCTGGAGTCCGTGTGTTTGGTTTGGCCAAGTAGCAGGCCCGTTTCAAAGAGATCGCTCAGGGTCCAATAGAGCGCATTTATTTATAACAAAAGAAAATgggaaacaaaaacaaataaaagCCACATTAAATTCATAGAAGTTCATCCAACACCAGAGTGTAAAAGAGAAACAGGAATCATGATCACCATTATGGGTGGTTTGAAATCtgtattatttgaccctgctggtcatctatgaatgtttgaacatcttggagaacaatctggccttaaatggccatgtactcttatagtctccatccggcacagaagaggactggccaaccctcagagcctggttcctctcttggtttcttcctaggttcctgcctttctagggagtttttcctagccaccatgtttctacatctgcattgcatgctgtttggggttttaggctggatttctgtatagcactttgtgaccatttttatttatttttaataaataaagggcttataaatacatttgattgattgattgttaaaTTTGACTTTGCCATGTGTGAATGAGCTCTGCTGTAGTATTTTATGTGGAAGGAGACCCTGACTTTCGTATGATCTATGCATATATCCTCCCATTTCCCCATCTCCAACTTTGTTACAATGTATTGATTGTTATACATCAATATCCTAGACCTAGAAGACTACTAATACAGGAAAGatccaaatacatttttgaatgaaTCATTTGTCTGAATTCAGTTTGTATTTGATTTAATACAGGGGCTGTTGGGCCTTGATGTTATGCACATAAT
>TU1682014
agtttttcctagccaccatgtttctacatctgcattgcatgctgtttggggttttaggctggatttctgtatagcactttgtgaccatttttatttatttttaataaataaagggcttataaatacatttgattgattgattgttaaaTTTGACTTTGCCATGTGTGAATGAGCTCTGCTGTAGTATTTTATGTGGAAGGAGACCCTGACTTTCGTATGATCTATGCATATATCCTCCCATTTCC

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1682011 False 2116 TUCP 0.40 1 60101892 60104007
TU1682010 False 1024 lncRNA 0.39 1 60102218 60103241
TU1682015 False 1730 lncRNA 0.39 1 60102218 60103947
TU1682018 False 1790 lncRNA 0.40 1 60102218 60104007
TU1682019 False 1196 lncRNA 0.38 1 60102218 60103413
TU1682014 True 245 lncRNA 0.35 1 60102997 60103241

Neighbor

gene id symbol gene type direction distance location
LOC110494256 LOC106565588 coding upstream 6848 60078750 ~ 60095370 (+)
LOC110494255 LOC106565587 coding upstream 23781 60063250 ~ 60078437 (+)
LOC110494251 LOC106565596 coding upstream 215176 59857225 ~ 59887042 (+)
LOC110494250 LOC106565597 coding upstream 432111 59657801 ~ 59670107 (+)
LOC118940557 NA coding upstream 479732 59622361 ~ 59622486 (+)
LOC110494259 LOC106565584 coding downstream 140778 60244785 ~ 60247910 (+)
srgap3 srgap3 coding downstream 161472 60265479 ~ 60383800 (+)
rad18 rad18 coding downstream 329919 60433926 ~ 60508595 (+)
LOC110494264 oxtr coding downstream 471671 60575678 ~ 60599614 (+)
LOC110494272 gpx1 coding downstream 866317 60970324 ~ 60971719 (+)
G1470595 NA non-coding upstream 41448 60060570 ~ 60060770 (+)
G1470586 NA non-coding upstream 51984 60049848 ~ 60050234 (+)
G1470585 NA non-coding upstream 52751 60049213 ~ 60049467 (+)
G1470575 NA non-coding upstream 63036 60038891 ~ 60039182 (+)
G1470557 LOC106565589 non-coding upstream 88696 60013230 ~ 60013522 (+)
G1470608 NA non-coding downstream 21 60104028 ~ 60105171 (+)
G1470609 NA non-coding downstream 1349 60105356 ~ 60105582 (+)
G1470610 LOC106565586 non-coding downstream 1586 60105593 ~ 60106359 (+)
G1470611 LOC106565586 non-coding downstream 3125 60107132 ~ 60107911 (+)
G1470616 NA non-coding downstream 14071 60118078 ~ 60118340 (+)
G1469076 NA other upstream 1594333 58507297 ~ 58507885 (+)
G1467219 NA other upstream 2487918 57589865 ~ 57614300 (+)
LOC110494206 LOC108254821 other upstream 2554040 57498305 ~ 57548178 (+)
G1467159 LOC106565433 other upstream 2618629 57478797 ~ 57554480 (+)
G1467031 NA other upstream 2951875 57149303 ~ 57150343 (+)
G1471723 LOC100380707 other downstream 868471 60972478 ~ 60999063 (+)
LOC110494283 LOC106565563 other downstream 1452312 61555873 ~ 61558328 (+)
G1473171 LOC106581772 other downstream 2594496 62698503 ~ 62698815 (+)
G1473177 NA other downstream 2606332 62710339 ~ 62711136 (+)
G1474159 NA other downstream 3112941 63216948 ~ 63217594 (+)

Expression


Co-expression Network