G1470608


Basic Information

Item Value
gene id G1470608
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 60104028 ~ 60105171 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1682020
ggatCTCTTTGATTTTTTGATAGTATATTTCTTTAGTAGGCCATGCCCTCATGTGTGATTGTGTTTGGCTTTGGTTATTCTAAaatatgtgtgtatttatttaagTCTAtggggtgtgtgtctctgtgtgctaccagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgctgtgtttatTGCGTGCCTGGGTGTTTGTGTGCTTTAATACCACACCCTGACAGCATGGTGACCCAGTTCTCTGTGTTTATTTGCTTTACACTTTATTGAATTGTCATGTGAGCTCTATTAAACTGAGGCTATAGTGACAGACTTTTCAGAGTGGAGATGGGGGAGGGAAGCAAGTTTGTTACTGGCAGAGGCACAGAAATACCTATCTCTTTGCATGTAGTCTGACAATAGAAAAATAGGACAATGGAAGTCAACAATACACTTTTTTCTCACTCTATATTGAGTGTTTAGTCGGGTGTTTTAAAGGCTAAATTAAAATCATATCTTTAACATTGTAAAGTGTATGAGGGTAGTGGATATATTGTGCTGGAAATGTGGTCTGTATCAGATACTACCTATGAGATGTACTGGGATAGGTTAAGTTTAGATTGAACCCACATAAAACATGCCTGTGAGCATGTGTTGACTGCATGTGTATGAGCATGTGAGTGGCTCTGTGTTTGTCAGTGTCTGTGTATGTAGCCATATGATGCTTGTTGTGAATTCTGGCAGCTGGTCAACCGCTCTACCATCCATAGTGTGGAAGTCATCCAATGAGATCATGATTCCCTCTGTAAAATAAAGTGCTCTTCCCTATTCTTTCTTCCTGTCCTCACTTCCTGTGTGCCATCTTAACATCTCCCCCTTCCGTATTTcca
>TU1682021
ggatCTCTTTGATTTTTTGATAGTATATTTCTTTAGTAGGCCATGCCCTCATGTGTGATTGTGTTTGGCTTTGGTTATTCTAAaatatgtgtgtatttatttaagTCTAtggggtgtgtgtctctgtgtgctaccagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgctgtgtttatTGCGTGCCTGGGTGTTTGTGTGCTTTAATACCACACCCTGACAGCATGGTGACCCAGTTCTCTGTGTTTATTTGCTTTACACTTTATTGAATTGTCATGTGAGCTCTATTAAACTGAGGCTATAGTGACAGACTTTTCAGAGTGGAGATGGGGGAGGGAAGCAAGTTTGTTACTGGCAGAGGCACAGAAATACCTATCTCTTTGCATGTAGTCTGACAATAGAAAAATAGGACAATGGAAGTCAACAATACACTTTTTTCTCACTCTATATTGAGTGTTTAGTCGGGTGTTTTAAAGGCTAAATTAAAATCATATCTTTAACATTGTAAAGTGTATGAGGGTAGTGGATATATTGTGCTGGAAATGTGGTCTGTATCAGATACTACCTATGAGATGTACTGGGATAGGTTAAGTTTAGATTGAACCCACATAAAACATGCCTGTGAGCATGTGTTGACTGCATGTGTATGAGCATGTGAGTGGCTCTGTGTTTGTCAGTGTCTGTGTATGTAGCCATATGATGCTTGTTGTGAATTCTGGCAGCTGGTCAACCGCTCTACCATCCATAGTGTGGAAGTCATCCAATGAGATCATGATTCCCTCTGTAAAATAAAGTGCTCTTCCCTATTCTTTCTTCCTGTCCTCACTTCCTGTGTGCCATCTTAACATCTCCCCCTTCCGTATTTccactcctcccttctcccttcatCTCTGCTGTGTTTGAGTTTGTCCTGGCTTCATGAAATATTTCGGACATTCTGCTGTTTTGAAACTATTGTTATAATTAATTAATAACATTTTGTGGGTCCATGATATGATTAAAGATGCCCTGGATTTAACAGAGTGTTATACAAAGCTATTCACATTGTACGAAGGATAGAAGGACAAACATTTACCCTAACTACTAGCAAAAAATACAAATTCATTATCTTGTAATATTCTCTCTAAAATAAAACAATGTATTGCA
>TU1682022
ACTGGGATAGGTTAAGTTTAGATTGAACCCACATAAAACATGCCTGTGAGCATGTGTTGACTGCATGTGTATGAGCATGTGAGTGGCTCTGTGTTTGTCAGTGTCTGTGTATGTAGCCATATGATGCTTGTTGTGAATTCTGGCAGCTGGTCAACCGCTCTACCATCCATAGTGTGGAAGTCATCCAATGAGATCATGATTCCCTCTGTAAAATAAAGTGCTCTTCCCTATTCTTTCTTCCTGTCCTCACTTCCTGTGTGCCATCTTAACATCTCCCCCTTCCGTATTTccactcctcccttctcccttcatCTCTGCTGTGTTTGAGTTTGTCCTGGCTTCATGAAATATTTCGGACATTCTGCTGTTTTGAAACTATTGTTATAATTAATTAATAACATTTTGTGGGTCCATGATATGATTAAAGATGCCCTGGATTTAACAGAGTGTTATACAAAGCTATTCACATTGTACGAAGGATAGAAGGACAAACATTTACCCTAACTACTAGCAAAAAATACAAATTCATTATCTTGTAATATTCTCTCTAAAATAAAACAATGTATTGCA
>TU1682023
ACTGGGATAGGTTAAGTTTAGATTGAACCCACATAAAACATGCCTGTGAGCATGTGTTGACTGCATGTGTATGAGCATGTGAGTGGCTCTGTGTTTGTCAGTGTCTGTGTATGTAGCCATATGATGCTTGTTGTGAATTCTGGCAGCTGGTCAACCGCTCTACCATCCATAGTGTGGAAGTCATCCAATGAGATCATGATTCCCTCTGTAAAATAAAGTGCTCTTCCCTATTCTTTCTTCCTGTCCTCACTTCCTGTGTGCCATCTTAACATCTCCCCCTTCCGTATTTcca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1682020 False 866 lncRNA 0.41 1 60104028 60104893
TU1682021 False 1144 lncRNA 0.39 1 60104028 60105171
TU1682022 False 570 lncRNA 0.39 1 60104602 60105171
TU1682023 True 292 lncRNA 0.44 1 60104602 60104893

Neighbor

gene id symbol gene type direction distance location
LOC110494256 LOC106565588 coding upstream 8658 60078750 ~ 60095370 (+)
LOC110494255 LOC106565587 coding upstream 25591 60063250 ~ 60078437 (+)
LOC110494251 LOC106565596 coding upstream 216986 59857225 ~ 59887042 (+)
LOC110494250 LOC106565597 coding upstream 433921 59657801 ~ 59670107 (+)
LOC118940557 NA coding upstream 481542 59622361 ~ 59622486 (+)
LOC110494259 LOC106565584 coding downstream 139614 60244785 ~ 60247910 (+)
srgap3 srgap3 coding downstream 160308 60265479 ~ 60383800 (+)
rad18 rad18 coding downstream 328755 60433926 ~ 60508595 (+)
LOC110494264 oxtr coding downstream 470507 60575678 ~ 60599614 (+)
LOC110494272 gpx1 coding downstream 865153 60970324 ~ 60971719 (+)
G1470607 NA non-coding upstream 21 60101892 ~ 60104007 (+)
G1470595 NA non-coding upstream 43258 60060570 ~ 60060770 (+)
G1470586 NA non-coding upstream 53794 60049848 ~ 60050234 (+)
G1470585 NA non-coding upstream 54561 60049213 ~ 60049467 (+)
G1470575 NA non-coding upstream 64846 60038891 ~ 60039182 (+)
G1470609 NA non-coding downstream 185 60105356 ~ 60105582 (+)
G1470610 LOC106565586 non-coding downstream 422 60105593 ~ 60106359 (+)
G1470611 LOC106565586 non-coding downstream 1961 60107132 ~ 60107911 (+)
G1470616 NA non-coding downstream 12907 60118078 ~ 60118340 (+)
G1470618 NA non-coding downstream 18207 60123378 ~ 60123586 (+)
G1469076 NA other upstream 1596143 58507297 ~ 58507885 (+)
G1467219 NA other upstream 2489728 57589865 ~ 57614300 (+)
LOC110494206 LOC108254821 other upstream 2555850 57498305 ~ 57548178 (+)
G1467159 LOC106565433 other upstream 2620439 57478797 ~ 57554480 (+)
G1471723 LOC100380707 other downstream 867307 60972478 ~ 60999063 (+)
LOC110494283 LOC106565563 other downstream 1451148 61555873 ~ 61558328 (+)
G1473171 LOC106581772 other downstream 2593332 62698503 ~ 62698815 (+)
G1473177 NA other downstream 2605168 62710339 ~ 62711136 (+)
G1474159 NA other downstream 3111777 63216948 ~ 63217594 (+)

Expression


Co-expression Network