G1470611 (LOC106565586)


Basic Information

Item Value
gene id G1470611
gene name LOC106565586
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 60107132 ~ 60107911 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1682026
TTCATGTTCATGGAGATGATGCTGCCATTCCTCTTGGCCCTCTCCAGGGCCTCCCGCCGTTTGATGGCCTTCTCCTGCCTCTTCTGCTCCTTGTAGAACTCTGAGAAGTTGTTGACGATGATGGGGATGGGCAAGGCTATCACCAACACTCCAGCTATGCAGCATAGACCCCCAATAATCTTACCCAGTAAAGTCTTTGGGTAGATGTCCCCATACCCCACCGTAGTCATAGTAATGGTAGCCCACCAGAAGGAGGCCGGGATGCTTTTGAACTTGGTGTCCTCCTCGTCCTTCTCGGCGAAGAAGACAAGGCTGGAGAAGATCATAATGCCCATGGCCAGGAATAGGATGAGCAGGCCCAGCTCATTGTAGCTCCTCCTCAGGGTGAAGCCCAGAGACTGAAGCCCTGTGGAATGCCTGGCCAGCTTCAGAATACGGAGGATACGCATGATCCTGAAGATCTGCACCACCCTCCGGACGTTCTGGAACTGTAAAACGCTCTTATTGGATTCAGTCAGGAAGATGGTGACGTAGTAGGGTAGGATGGCCAGCAGGTCTATTATGTTTAGTGGACCTTTGAAGAACTTCCACTTGCTGGGCGAGGAGATGAAGCGGAGCAGGTACTCCATGGTGAACCAGGCGATGCACACCGCTTCCACGTGAGCTAGCTGAGGGTTGTCTGTCACCTGGCCAAACTCGTCTATGTCCTGCAGCTCTGGGAGGGTGTTCAGAGACAAGGCAATGGTTGACAGCACGATAAAGAGGATGGAGATGATGGCC

Function

NR:

description
PREDICTED: potassium voltage-gated channel subfamily B member 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1682026 True 780 lncRNA 0.53 1 60107132 60107911

Neighbor

gene id symbol gene type direction distance location
LOC110494256 LOC106565588 coding upstream 11762 60078750 ~ 60095370 (+)
LOC110494255 LOC106565587 coding upstream 28695 60063250 ~ 60078437 (+)
LOC110494251 LOC106565596 coding upstream 220090 59857225 ~ 59887042 (+)
LOC110494250 LOC106565597 coding upstream 437025 59657801 ~ 59670107 (+)
LOC118940557 NA coding upstream 484646 59622361 ~ 59622486 (+)
LOC110494259 LOC106565584 coding downstream 136874 60244785 ~ 60247910 (+)
srgap3 srgap3 coding downstream 157568 60265479 ~ 60383800 (+)
rad18 rad18 coding downstream 326015 60433926 ~ 60508595 (+)
LOC110494264 oxtr coding downstream 467767 60575678 ~ 60599614 (+)
LOC110494272 gpx1 coding downstream 862413 60970324 ~ 60971719 (+)
G1470610 LOC106565586 non-coding upstream 773 60105593 ~ 60106359 (+)
G1470609 NA non-coding upstream 1550 60105356 ~ 60105582 (+)
G1470608 NA non-coding upstream 1961 60104028 ~ 60105171 (+)
G1470607 NA non-coding upstream 3125 60101892 ~ 60104007 (+)
G1470595 NA non-coding upstream 46362 60060570 ~ 60060770 (+)
G1470616 NA non-coding downstream 10167 60118078 ~ 60118340 (+)
G1470618 NA non-coding downstream 15467 60123378 ~ 60123586 (+)
G1470626 NA non-coding downstream 30249 60138160 ~ 60138435 (+)
G1470628 NA non-coding downstream 31612 60139523 ~ 60139760 (+)
G1470629 NA non-coding downstream 32509 60140420 ~ 60140656 (+)
G1469076 NA other upstream 1599247 58507297 ~ 58507885 (+)
G1467219 NA other upstream 2492832 57589865 ~ 57614300 (+)
LOC110494206 LOC108254821 other upstream 2558954 57498305 ~ 57548178 (+)
G1467159 LOC106565433 other upstream 2623543 57478797 ~ 57554480 (+)
G1471723 LOC100380707 other downstream 864567 60972478 ~ 60999063 (+)
LOC110494283 LOC106565563 other downstream 1448408 61555873 ~ 61558328 (+)
G1473171 LOC106581772 other downstream 2590592 62698503 ~ 62698815 (+)
G1473177 NA other downstream 2602428 62710339 ~ 62711136 (+)
G1474159 NA other downstream 3109037 63216948 ~ 63217594 (+)

Expression


Co-expression Network