G1470649


Basic Information

Item Value
gene id G1470649
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 60170147 ~ 60170458 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1682064
tgacagtttatgacagccccaaaacatatgcaacagtgtggctggttccaccttacatctgacacaggtaggatcaaaatcagagaatattcttccaagtttggcccccgaccagtggatacggtgaaccaccttgaattgaatgaggctgtgtctagtgctaaaagaggacgagtgcaccctgtgcagcacagattcccaggcgtcttccccaagttcctcccccaaatccttttcccatcgagtctttaaaggcaccaaagaagggttctgtaagtcatgaatgattgcatatacatctgaaattgcgcc

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1682064 True 312 lncRNA 0.47 1 60170147 60170458

Neighbor

gene id symbol gene type direction distance location
LOC110494256 LOC106565588 coding upstream 74777 60078750 ~ 60095370 (+)
LOC110494255 LOC106565587 coding upstream 91710 60063250 ~ 60078437 (+)
LOC110494251 LOC106565596 coding upstream 283105 59857225 ~ 59887042 (+)
LOC110494250 LOC106565597 coding upstream 500040 59657801 ~ 59670107 (+)
LOC118940557 NA coding upstream 547661 59622361 ~ 59622486 (+)
LOC110494259 LOC106565584 coding downstream 74327 60244785 ~ 60247910 (+)
srgap3 srgap3 coding downstream 95021 60265479 ~ 60383800 (+)
rad18 rad18 coding downstream 263468 60433926 ~ 60508595 (+)
LOC110494264 oxtr coding downstream 405220 60575678 ~ 60599614 (+)
LOC110494272 gpx1 coding downstream 799866 60970324 ~ 60971719 (+)
G1470648 NA non-coding upstream 363 60169578 ~ 60169784 (+)
G1470645 NA non-coding upstream 5227 60164605 ~ 60164920 (+)
G1470642 NA non-coding upstream 7874 60161981 ~ 60162273 (+)
G1470634 NA non-coding upstream 21736 60148207 ~ 60148411 (+)
G1470629 NA non-coding upstream 29491 60140420 ~ 60140656 (+)
G1470650 NA non-coding downstream 511 60170969 ~ 60171227 (+)
G1470652 NA non-coding downstream 2485 60172943 ~ 60173152 (+)
G1470655 NA non-coding downstream 7098 60177556 ~ 60177757 (+)
G1470664 NA non-coding downstream 21717 60192175 ~ 60192408 (+)
G1470665 LOC106565586 non-coding downstream 22183 60192641 ~ 60192900 (+)
G1470607 NA other upstream 66140 60101892 ~ 60104007 (+)
G1469076 NA other upstream 1662262 58507297 ~ 58507885 (+)
G1467219 NA other upstream 2555847 57589865 ~ 57614300 (+)
LOC110494206 LOC108254821 other upstream 2621969 57498305 ~ 57548178 (+)
G1467159 LOC106565433 other upstream 2686558 57478797 ~ 57554480 (+)
G1471723 LOC100380707 other downstream 802020 60972478 ~ 60999063 (+)
LOC110494283 LOC106565563 other downstream 1385861 61555873 ~ 61558328 (+)
G1473171 LOC106581772 other downstream 2528045 62698503 ~ 62698815 (+)
G1473177 NA other downstream 2539881 62710339 ~ 62711136 (+)
G1474159 NA other downstream 3046490 63216948 ~ 63217594 (+)

Expression


Co-expression Network