G1471083 (LOC106565584)


Basic Information

Item Value
gene id G1471083
gene name LOC106565584
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 60245489 ~ 60247884 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1682538
cactggtTCATACAGCTGCAAAGACAACATACAAGTCACACAAGCACATCTTTATACCTTCCAACTAGGCAGAGTCATCTCCTTGCATGTCTAAGATAGGAAAGTAGTGTCTGTTGTTAGGCAGAAACATAGTAGATTCCTCTTACTGGTATTGTCATGGCCCTGCCTAAGTCTAGGACCCTCATGGGCTTGGAAATATGTGTGCGTGAGATAGGACTGTGTTCAGATGGCCTTCATGGTGGGCCTCTGTGGCCCACCTCCCAGCAGTGTATTTTGTCTTCAACTGTTGACCTTATCTCGAGTTGAGTTCCACATCCCTCGTGGTCCTGGTTCCGCAGAaactggcctgccttatcaggtACTAAAACTAGACTACTGTtgccctctgcctccctccttaGGAACATTAATATTCCACGATAACATATTTGAACAGAATATCAACTTTTTGcacttccccttttccctctcggTAACTTTCCATATCACTCAGTAACTTTCCACACACAGAGTTCCTCTGTACCCTTCATTGACACATTCCTTATACATGTAAAGTAATCAATAAGTTCTGGTATGGTTCTGGTATGGTAACATGAATAAGTATACTTCAAGCTAGAATCCAACAGTAGCCTAACATTGTACATTGTAAAAATAAATGACCTGTCCACTTATTAAGCTCGTTGTTCATATTTTGTCCTTTTTTCATCCTTAGTTGTTCACTCAGACTCTGATTTAATGTCCATGTCCTCCTTTGTGTCACTCTGAAGCTGTGTGCTGGACCCTAGTTCTGTTCCTGGCTCAAAAAGGTTAAGGTTCGCCCTAATAGCCACCAATTTCTCCACTCTGTTGTTTGTTAAACTGTTGCCCACCTTTGTTTTGGTTTTCCCAAAGAATGCTCTGAGGCGCAAAGAAGctgctgatgttggtgggatctGAAGGATCACAGAGGCGATGGGTGACAGGGCCTCAGATGCACAGAGACCCTTCCACCAGGTGTAGGGAGAAATGTGCTGGCATGATTGCCATATCCCATCCCCATTCCAAAGGCCTTGCTTGGTAGAAAACTTTGCCAGACTTGCCAGAACTTTGCCCTCATCAAGATTGAGGTGGTGTGAGAGGGTAGAAATCACATAGTATGCGCTGTTGATCTGTTCTCCAGAAAGTATTTGTTTCCCAATATGCTTTGGATCCAGCATGTATGCTGCAGCGTGAATTGGCTTGATACAAAACTCTCCACACAGCTCCAGAAATCGAACAACTGCCGTCTCCTCTGTGTTGAGTAGCAAGGCTGAAGGGAGGGCTGTGCTGATTTTGTCTTTTAAATCAGCAAAAAGCCTGAGAACATCTGACAAGACAGCATCCTCTCCTTCAATCTGATCAATGGCAAATGCGATCGGTGAGAGTAGCATAAGATTGCgaaccactctctcccaaaacacATCATCAAGCAGTATTTTCCTGATGGAGATTTCAATTTCCACAGACTGTGATCTTGCCATTTCTTGCAGAGACTCCTTGTCTTTCAGAAGGCTGCTGTACATGGTGACAACCCCAGCCCATCTAATGTTGCAGGTCAGTTTCAGTGTGGAgttatttttctttgtatttttatTGCTGTAGGTTGCTGACACTTCCTCTTTGCTCCTGACATCCTGTACAACTTGCTTGGCTGTCTTGTATAGTGTTTCCATTGTTTGCAAACTCATGATGTCCTTGATGAGTAGGTTAAGCCCATGAACCATGCACCCAATAGGTGTAATGTGAGGGTAGGCCTCCTCCACTTGTGCCCAGGCAGCCTTCATGTTTGCAGCACTATCAGTAACAACAGCAAACACCTTCTGTGGTCCAACGTCATTGATTACAGCCTTCAGCTCATCAGCAATGtgcgtgctcgtgtgtgtgttgtccttttTGTCTGTCGTCTTGAAAACCAATGGTAGAGGAGTAGAGACTATGTAGTTTATGATGCCATCCCCTTGTACATTTGACCACCCTTCGGAGACAACAGCAACACTGTCTGCCTTCTCTATTGTTTCCTTCACCTTTCCTTGCACTCTGTTGAACTCAGCTTCCAGTAAATTAGTAGACAGAGCATCTCTGTTTGGAGGAGAGTATCCAGGGCAAATAACATTGAAACATCTCTTCCAGTACACATTCTCACTGAGCATGAGGGGTGAGCCGGTGGCATATACTGCTCGAGCCAGGCACTCATCGGCATTCTTCTGGCTGTGGTCTTCCATTGTATGGCAGAACAATGGTTCTTGTGCACTTTGATATAATGTTGCATTTTTGCATTTGGTTAAATGCACCTGCAACTTTGTGGCATTCTTTACATACTGCTTTGTACAGTAGTTGCACATGTACATAGTCTTCCCATCGTCATTAATGGCTGGGGT

Function

NR:

description
uncharacterized protein LOC109895376

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1682538 True 2396 lncRNA 0.45 1 60245489 60247884

Neighbor

gene id symbol gene type direction distance location
thumpd3 thumpd3 coding downstream 671 60235875 ~ 60244818 (-)
LOC110494258 LOC106565585 coding downstream 21925 60197620 ~ 60223564 (-)
LOC118940153 LOC106565586 coding downstream 52042 60191725 ~ 60193447 (-)
LOC110494257 LOC106565586 coding downstream 135240 60104033 ~ 60110249 (-)
LOC110494254 LOC106565589 coding downstream 216838 60008004 ~ 60028651 (-)
LOC118940555 NA coding upstream 8964 60256848 ~ 60257008 (-)
LOC110494265 cav3 coding upstream 352204 60600088 ~ 60602922 (-)
LOC110494266 LOC106565579 coding upstream 368364 60616248 ~ 60618713 (-)
LOC110495180 LOC106565578 coding upstream 378300 60626184 ~ 60631176 (-)
LOC110494267 LOC106565611 coding upstream 397125 60645009 ~ 60652846 (-)
G1471124 NA non-coding downstream 12632 60232635 ~ 60232857 (-)
G1471120 NA non-coding downstream 16295 60228874 ~ 60229194 (-)
G1471119 NA non-coding downstream 17452 60227743 ~ 60228037 (-)
G1471095 NA non-coding downstream 55513 60189692 ~ 60189976 (-)
G1471093 NA non-coding downstream 58299 60186989 ~ 60187190 (-)
G1471206 NA non-coding upstream 102598 60350482 ~ 60351321 (-)
G1471213 NA non-coding upstream 121070 60368954 ~ 60370065 (-)
G1471214 NA non-coding upstream 122212 60370096 ~ 60370433 (-)
G1471215 NA non-coding upstream 123312 60371196 ~ 60371471 (-)
G1471216 NA non-coding upstream 124448 60372332 ~ 60372716 (-)
LOC110494253 LOC106565590 other downstream 249163 59990975 ~ 59999740 (-)
G1470802 NA other downstream 568795 59674541 ~ 59676694 (-)
hig1a hig1a other downstream 3012782 57229440 ~ 57233433 (-)
elmo2 LOC106565399 other downstream 3745164 56494856 ~ 56530610 (-)
G1471219 srgap3 other upstream 127862 60375633 ~ 60376864 (-)
G1471564 NA other upstream 390296 60638180 ~ 60639335 (-)
ccdc174 NA other upstream 1998495 62246379 ~ 62250654 (-)
G1473866 NA other upstream 2482269 62730153 ~ 62730503 (-)
G1474395 NA other upstream 2800755 63048639 ~ 63100752 (-)

Expression


Co-expression Network