G1470689


Basic Information

Item Value
gene id G1470689
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 60260502 ~ 60261000 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1682107
aaagccccaccttatctcagctcactggtcaccatagcaacacccacacgtagcatgcgctccagcaggtatatttcacttgtcatccccaaagccaacacttactttggccgcctttccttccagttctctgctgccaatgactggaaatattttcaaaaatcactgaagctggagacatatctccttctctaactttaagcatcagctgtcagagcagcttaccgatcactgtacctgtacacagccaatctgtaaatagcccacccaactacctcattcccatattgttatttatcttcctgctcttttgcaccccagtatctctacttgcacatcatcatctgtacatctatcactccagtgttaatgctaaattgtaataacTTCGCctctatggtctatttattgccttacctccctgaccttctacatttgcacacactatacatagattgttctattgtgttattgactgtacttttgtttatgtgtaact

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1682107 True 499 lncRNA 0.42 1 60260502 60261000

Neighbor

gene id symbol gene type direction distance location
LOC110494259 LOC106565584 coding upstream 12592 60244785 ~ 60247910 (+)
LOC110494256 LOC106565588 coding upstream 165132 60078750 ~ 60095370 (+)
LOC110494255 LOC106565587 coding upstream 182065 60063250 ~ 60078437 (+)
LOC110494251 LOC106565596 coding upstream 373460 59857225 ~ 59887042 (+)
LOC110494250 LOC106565597 coding upstream 590395 59657801 ~ 59670107 (+)
srgap3 srgap3 coding downstream 4479 60265479 ~ 60383800 (+)
rad18 rad18 coding downstream 172926 60433926 ~ 60508595 (+)
LOC110494264 oxtr coding downstream 314678 60575678 ~ 60599614 (+)
LOC110494272 gpx1 coding downstream 709324 60970324 ~ 60971719 (+)
LOC110494274 brk1 coding downstream 753725 61014725 ~ 61019187 (+)
G1470701 NA non-coding upstream 9446 60250852 ~ 60251056 (+)
G1470666 LOC106565586 non-coding upstream 67283 60192910 ~ 60193219 (+)
G1470665 LOC106565586 non-coding upstream 67602 60192641 ~ 60192900 (+)
G1470664 NA non-coding upstream 68094 60192175 ~ 60192408 (+)
G1470713 NA non-coding downstream 3720 60264720 ~ 60264923 (+)
G1470773 NA non-coding downstream 106151 60367151 ~ 60367406 (+)
G1470776 NA non-coding downstream 122908 60383908 ~ 60384114 (+)
G1470777 NA non-coding downstream 124296 60385296 ~ 60385558 (+)
G1470607 NA other upstream 156495 60101892 ~ 60104007 (+)
G1469076 NA other upstream 1752617 58507297 ~ 58507885 (+)
G1467219 NA other upstream 2646202 57589865 ~ 57614300 (+)
LOC110494206 LOC108254821 other upstream 2712324 57498305 ~ 57548178 (+)
G1467159 LOC106565433 other upstream 2776913 57478797 ~ 57554480 (+)
G1471723 LOC100380707 other downstream 711478 60972478 ~ 60999063 (+)
LOC110494283 LOC106565563 other downstream 1295319 61555873 ~ 61558328 (+)
G1473171 LOC106581772 other downstream 2437503 62698503 ~ 62698815 (+)
G1473177 NA other downstream 2449339 62710339 ~ 62711136 (+)
G1474159 NA other downstream 2955948 63216948 ~ 63217594 (+)

Expression


Co-expression Network