G1471394


Basic Information

Item Value
gene id G1471394
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 60510870 ~ 60511105 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1682871
agatgaattcacctttcagcaagataataacctaaaacacaaggccaaacctACACTGGAGttccttaccaagaagacagtgaatattcctgagtggccgagttacagttttgacttaaatctgcttgaaaatctatggcaggacttgaaaatggttgtctagcaatgatcgaaATCAAACTTGACagtgcttgaagaattttgaaaataataatgggcaaacattgtacaatcca

Function

NR:

description
Transposable element Tcb1 transposase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1682871 True 236 lncRNA 0.37 1 60510870 60511105

Neighbor

gene id symbol gene type direction distance location
rad18 rad18 coding upstream 2275 60433926 ~ 60508595 (+)
srgap3 srgap3 coding upstream 127459 60265479 ~ 60383800 (+)
LOC110494259 LOC106565584 coding upstream 262960 60244785 ~ 60247910 (+)
LOC110494256 LOC106565588 coding upstream 415500 60078750 ~ 60095370 (+)
LOC110494255 LOC106565587 coding upstream 432433 60063250 ~ 60078437 (+)
LOC110494264 oxtr coding downstream 64573 60575678 ~ 60599614 (+)
LOC110494272 gpx1 coding downstream 459219 60970324 ~ 60971719 (+)
LOC110494274 brk1 coding downstream 503620 61014725 ~ 61019187 (+)
LOC110494275 LOC106565569 coding downstream 513603 61024708 ~ 61037602 (+)
LOC110494276 NA coding downstream 528173 61039278 ~ 61043722 (+)
G1471395 NA non-coding upstream 62 60510461 ~ 60510808 (+)
G1471279 NA non-coding upstream 1733 60508631 ~ 60509137 (+)
G1471265 NA non-coding upstream 83109 60427558 ~ 60427761 (+)
G1471261 NA non-coding upstream 84703 60425958 ~ 60426167 (+)
G1471250 NA non-coding upstream 91793 60418669 ~ 60419077 (+)
G1471475 NA non-coding downstream 96313 60607418 ~ 60607656 (+)
G1471451 NA non-coding downstream 105070 60616175 ~ 60618887 (+)
G1471481 LOC106565578 non-coding downstream 116576 60627681 ~ 60631108 (+)
G1471483 NA non-coding downstream 127197 60638302 ~ 60639532 (+)
G1471569 NA non-coding downstream 143849 60654954 ~ 60655267 (+)
G1470607 NA other upstream 406863 60101892 ~ 60104007 (+)
G1469076 NA other upstream 2002985 58507297 ~ 58507885 (+)
G1467219 NA other upstream 2896570 57589865 ~ 57614300 (+)
LOC110494206 LOC108254821 other upstream 2962692 57498305 ~ 57548178 (+)
G1467159 LOC106565433 other upstream 3027281 57478797 ~ 57554480 (+)
G1471723 LOC100380707 other downstream 461373 60972478 ~ 60999063 (+)
LOC110494283 LOC106565563 other downstream 1045214 61555873 ~ 61558328 (+)
G1473171 LOC106581772 other downstream 2187398 62698503 ~ 62698815 (+)
G1473177 NA other downstream 2199234 62710339 ~ 62711136 (+)
G1474159 NA other downstream 2705843 63216948 ~ 63217594 (+)

Expression


Co-expression Network