G1471481 (LOC106565578)


Basic Information

Item Value
gene id G1471481
gene name LOC106565578
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 60627681 ~ 60631108 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1682961
CATTtagggttctattcaatctgtaAAGCTGAATCGTTACAGATTCCatgatagaaatgtaaaggtaatttccgattgagccgacatactgtatgcagcgtttaccgtgaatgcagtctctgctaaaGTGGCAACATTGCCCTTTAAATTTAAATCTCGCTGTAAAGCTGAACATCcacaatacagattgaatagagcccttataCTATACACCATGCATTGAAACCCCAAGCACATCGTTCAACTCCATCAAGCACTAACTGAAAACATTGAGTAGATCACGTCGAAGGAGTTCAAAGGTGAGAGGACCCACCAGATATGTAGGCAGCTGAAGACAGCGAAGAGGATCCCTGCTACCAGAGAGACGGGCACGGccaggaggagggagatgagccGGTAGCACCAGAGACGGGAAACCTCAAACAGGGCGTGGCTCCACAGCCACACCTTATCGAAGCTCCGCACCGAGGGGGGCTCTGCTATCACGTCCTCAAAGGTCACCTCTTTAGATACTTGTTGACTCCCCTTGGGTCCCTGTTCTTGACCAGAGACCTGATGTCACTGTGGGTGGAGTCCTCCTCCTGAGCTGGTtcctctgcctctacctccaCTACTTCCTCCAGTAGTCCCTCTGCAGTGTGTCTGCCTGGAGGGATCCCCTGCTCCTCTATGTCCTCCAGGTCTAGCCTGGTCTCAGCTGGTGTACGCCCCGTGGTCATGGTGTGTGTGCCTCAGTGGCATGCACCCTCACTGGGCTGGGAGAGCGGATGAAAGGGGGT

Function

NR:

description
caveolin-2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1682961 True 779 lncRNA 0.52 2 60627681 60631108

Neighbor

gene id symbol gene type direction distance location
LOC110494264 oxtr coding upstream 28067 60575678 ~ 60599614 (+)
rad18 rad18 coding upstream 119086 60433926 ~ 60508595 (+)
srgap3 srgap3 coding upstream 244270 60265479 ~ 60383800 (+)
LOC110494259 LOC106565584 coding upstream 379771 60244785 ~ 60247910 (+)
LOC110494256 LOC106565588 coding upstream 532311 60078750 ~ 60095370 (+)
LOC110494272 gpx1 coding downstream 339216 60970324 ~ 60971719 (+)
LOC110494274 brk1 coding downstream 383617 61014725 ~ 61019187 (+)
LOC110494275 LOC106565569 coding downstream 393600 61024708 ~ 61037602 (+)
LOC110494276 NA coding downstream 408170 61039278 ~ 61043722 (+)
LOC110494279 LOC106565568 coding downstream 423523 61054631 ~ 61129367 (+)
G1471451 NA non-coding upstream 8794 60616175 ~ 60618887 (+)
G1471475 NA non-coding upstream 20025 60607418 ~ 60607656 (+)
G1471394 NA non-coding upstream 116576 60510870 ~ 60511105 (+)
G1471395 NA non-coding upstream 116873 60510461 ~ 60510808 (+)
G1471279 NA non-coding upstream 118544 60508631 ~ 60509137 (+)
G1471483 NA non-coding downstream 7194 60638302 ~ 60639532 (+)
G1471569 NA non-coding downstream 23846 60654954 ~ 60655267 (+)
G1471606 NA non-coding downstream 88386 60719494 ~ 60720883 (+)
G1471620 NA non-coding downstream 116427 60747535 ~ 60751998 (+)
G1471687 NA non-coding downstream 216184 60847292 ~ 60847744 (+)
G1470607 NA other upstream 523674 60101892 ~ 60104007 (+)
G1469076 NA other upstream 2119796 58507297 ~ 58507885 (+)
G1467219 NA other upstream 3013381 57589865 ~ 57614300 (+)
LOC110494206 LOC108254821 other upstream 3079503 57498305 ~ 57548178 (+)
G1467159 LOC106565433 other upstream 3144092 57478797 ~ 57554480 (+)
G1471723 LOC100380707 other downstream 341370 60972478 ~ 60999063 (+)
LOC110494283 LOC106565563 other downstream 925211 61555873 ~ 61558328 (+)
G1473171 LOC106581772 other downstream 2067395 62698503 ~ 62698815 (+)
G1473177 NA other downstream 2079231 62710339 ~ 62711136 (+)
G1474159 NA other downstream 2585840 63216948 ~ 63217594 (+)

Expression


Co-expression Network