G1471564


Basic Information

Item Value
gene id G1471564
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 60638180 ~ 60639335 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1683060
aaagaaccTCATCCCAACCGTCAagtatgggggtggcagcatcatgttgttgaggtgctttgctgcaggaaggactggtgccctttacaaaatagatggcatcaatgaccccaagcatacttccaaagttgtggcaaaatggcttaaggacaacaaagtcaaggtattggagtggccatcacaaaaccctgacctcaatcctatagacaatttgtgggcagaactgaaaaagcgtgtgcgagcaaggaggcctacaaacctgattcagttacaccagctctgtcaggaggaatgggccaaaattctcccaacttattgtgggaagcttgtggaaggctaccagaaacggttgacccaagttaaacaatttaaaggcaatgctaccaaatactaattgagtgtatgcaaacttctgacccactgggaatgtgatgaaagaaataaaaactgaaataaatccctctctctactattgttctgacatttcacattcttataataaagtggtgatcctaactgacctaagactttTTATGCACAATtgatactaggattaaatgtcaggaattgtgaatttCAATGTATCTgtctaatgtgtatgtaaacgtccgacttcaactgtgtatatcaATGCAAGGGATTAGAGGCAAAACTAGTATACAACGTCAAAACAGCATCATGGAGATGTCAAAATGGAAGCATCCACCATTAATCAAAAAGGGATACTGATATAGCCTTAATTGTTGTGGCTCGATATGATAACagtcagtgaaagtgcagggcgtcaaattcaaacaacagaaatctcataattaaaattcctcaaacatacaagtattttacacaattttaaagataaacttgttgttaatcccaccacagtgtccgatttcaaaaaggctttacggcgaaaccacaccaaacgattatgttacgTCAGTACCTTGTCACAGAAAAACATagtcatttttccagccaaagagaggagtcacaaaaagcagaaatagagataaaattaatcactaacctttgatgatcttcatcagatgacactcataggacttcatgttacacaacatATGTATGTTttcttcaataaagttcatatttatatccaaaaatctcagtttacattggcgcgtttacgttcagtaat
>TU1683059
gtgccctttacaaaatagatggcatcaatgaccccaagcatacttccaaagttgtggcaaaatggcttaaggacaacaaagtcaaggtattggagtggccatcacaaaaccctgacctcaatcctatagacaatttgtgggcagaactgaaaaagcgtgtgcgagcaaggaggcctacaaacctgattcagttacaccagctctgtcaggaggaatgggccaaaattctcccaacttattgtgggaagcttgtggaaggctaccagaaacggttgacccaagttaaacaatttaaaggcaatgctaccaaatactaattgagtgtatgcaaacttctgacccactgggaatgtgatgaaagaaataaaaactgaaataaatccctctctctactattgttctgacatttcacattcttataataaagtggtgatcctaactgacctaagactttTTATGCACAATtgatactaggattaaatgtcaggaattgtgaatttCAATGTATCTgtctaatgtgtatgtaaacgtccgacttcaactgtgtatatcaATGCAAGGGATTAGAGGCAAAACTAGTATACAACGTCAAAACAGCATCATGGAGATGTCAAAATGGAAGCATCCACCATTAATCAAAAAGGGATACTGATATAGCCTTAATTGTTGTGGCTCGATATGATAACagtcagtgaaagtgcagggcgtcaaattcaaacaacagaaatctcataattaaaattcctcaaacatacaagtattttacacaattttaaagataaacttgttgttaatcccaccacagtgtccgatttcaaaaaggctttacggcgaaaccacaccaaacgattatgttacgTCAGTACCTTGTCACAGAAAAACATagtcatttttccagccaaagagaggagtca

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1683060 False 1156 TUCP 0.38 1 60638180 60639335
TU1683059 True 914 lncRNA 0.39 1 60638345 60639258

Neighbor

gene id symbol gene type direction distance location
LOC110495180 LOC106565578 coding downstream 7169 60626184 ~ 60631176 (-)
LOC110494266 LOC106565579 coding downstream 19632 60616248 ~ 60618713 (-)
LOC110494265 cav3 coding downstream 35423 60600088 ~ 60602922 (-)
LOC118940555 NA coding downstream 381337 60256848 ~ 60257008 (-)
thumpd3 thumpd3 coding downstream 393527 60235875 ~ 60244818 (-)
LOC110494267 LOC106565611 coding upstream 5751 60645009 ~ 60652846 (-)
LOC110495181 LOC106565577 coding upstream 17878 60657136 ~ 60678786 (-)
LOC110494268 LOC106565576 coding upstream 67870 60707128 ~ 60783029 (-)
LOC110494271 LOC106565575 coding upstream 148927 60788185 ~ 60945418 (-)
fancd2 fancd2 coding upstream 306291 60945549 ~ 60970081 (-)
G1471537 NA non-coding downstream 47572 60589733 ~ 60590773 (-)
G1471397 NA non-coding downstream 127894 60510011 ~ 60510451 (-)
G1471396 NA non-coding downstream 128468 60509602 ~ 60509877 (-)
G1471260 NA non-coding downstream 212389 60425744 ~ 60425956 (-)
G1471251 NA non-coding downstream 219370 60418697 ~ 60418975 (-)
G1471982 gpx1 non-coding upstream 331070 60970328 ~ 60971719 (-)
G1472116 NA non-coding upstream 400522 61039780 ~ 61040297 (-)
G1472118 NA non-coding upstream 403049 61042307 ~ 61042603 (-)
G1472119 NA non-coding upstream 404203 61043461 ~ 61043710 (-)
G1472120 NA non-coding upstream 405982 61045240 ~ 61045454 (-)
G1471219 srgap3 other downstream 261753 60375633 ~ 60376864 (-)
LOC110494257 LOC106565586 other downstream 531158 60104033 ~ 60110249 (-)
LOC110494253 LOC106565590 other downstream 642019 59990975 ~ 59999740 (-)
G1470802 NA other downstream 961651 59674541 ~ 59676694 (-)
hig1a hig1a other downstream 3405638 57229440 ~ 57233433 (-)
ccdc174 NA other upstream 1607121 62246379 ~ 62250654 (-)
G1473866 NA other upstream 2090895 62730153 ~ 62730503 (-)
G1474395 NA other upstream 2409381 63048639 ~ 63100752 (-)
G1474425 LOC106565679 other upstream 2494567 63133825 ~ 63145087 (-)
LOC110494346 LOC106565668 other upstream 2767647 63403851 ~ 63409818 (-)

Expression


Co-expression Network