G1471723 (LOC100380707)


Basic Information

Item Value
gene id G1471723
gene name LOC100380707
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 60972478 ~ 60999063 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1683229
CCAGTCTTTATTGTATTTCCAATCCAAATAATTCTCAATTAAAAACATATTGCAACAGTTGTTGCAATTTTTTGAAATAGTGATTATTTACATCTATTCAAGATATTGATGCTCAAATTGCTAAGTTGCTCATGAGGATTGTAAAGAAAAgcaactaatccaatctgttttGGACAGCTGGATGCCTTTTTCACTTGCTATAGAATATTACAGATATGGTGTAAAGCTTTTCTATTCATTGACATAAATATGGTTATATTAATCATGTAATCATCTCAGGAGGGCATAATCACAGAGGGACCAACCAGCAAACAGATCATTTGCAGTCCTATAAGACATTTACATGCTTTTGTGCCACATGGAAAAAGCACAGGACAAATGCCAGAGCTAGAATTTATCTTAGGGGAAATCCATCCATGAAGTAGTTACTGGTATCTTGTATCAACCTTTACAAGACACTTAGCAACACAGTGAAATTCAACAGAAGGGTGCTGAATCTGGAGAAGGTATCAGAGGCACTGGTTCCTGACATGTATTGTGTTGCCGTCACCAGCCCCCCACAAGCCGAGCAGCTGTTACTGAAGGCTTCTAGTATTTAATGGGACACATGTCTCAGTGAAGAATATAGAGCTACGTAGCTAGCAACAGTCCGACAGCATACAAGCAGATCGATTTATAGGAGTCCTTTTTCCATCCATTGACGAGCAAGATGTCATGTcataattatatattttatttaacagcTGATTGGTTGTCTGAGAGTCCATTGTGGGAGAACATGGCTGCAGGCAAACTGAGGATGCCTTTAAGTTATTGCTGTCCAAATTCTATTTGACAATGGATTGGAGACTTATCATGAACAGCAATAATTTCAAGTCTCAAATTTAGCACCACTttcatacatgtcagatttcaatgcAGGACTGTAATACCACAAAACAGGTAGCCTAAGGACAAGCCACAGCTGGCAGTCGGAGGGTCCATTCAGTAAGCAATCAAATATGCTTGGAAGTACAGCCATATTATTTGGAAATGTATGAGTGGTCAGGGCCTTGCCACGTGTCATTCATAGATGTATTATTCCAGATGCAACTAAAGGAAAACTTAGAGTGCTTCCTTTTTGAAAACAGGTTGCAAGATTAAAAAGGCCGCTGTTTCTTTTGCGTAACGAGGGGGAGCAGCACATCTTTAGCAGGATGAGACGTATCTCATAGAGCACGGGGAAGGGGGGGTATGAGCGAGACAGCATTACCATGCCTGGCTTCATAAAGAGCAGGCGCTAAGGTCTGACTGAAGTCACGTCTCTGAAAATGAAGCCTCTGCCACAGCATACATCAAGGCACAGTAAACAGGACCTTAAGGGAACACCATATACTGTGGAAATGACCTGCAGGCCATCCCAGAGGCAGAATAGAATGAAGgggcctgtgtgtgtttctgtagcaGATGGAACACCTCCAATGTGCCTTTCTGACTGGATCCATTCTTCACAGGAGGCAGAAGGTCACAGGATCCATCAGTGTCATGTGTTGAATTCTGTGTACATCTCAATGTTAAATACAAATTTGCATAAATTCACCCCTGCCCTGGAGGGTTATCATCACATACACAAATCAGAGACAACTCAAGGGCATGTTTCCCCTTTCCCCCATGTCTGTCAATGCAGTTGGTACATTTCTTTAGAATGTACAACTTGGAACGCTTTGGTAGAAACAAGATGtggatttgttgtttttttattttttgactTTTCTAGTGGGTAACAGAAAAGTTTGCGTTAATAATACTTATGCATTTTAGTGCACTTCTAACATTCTGTTCGTCCAGTGAGAATTCTAAGCCTTTTATATTcctctttatttatttaaactaaTCAACTTGATTTCACACATCAGCAGGCCACCGGCTCCAGGGAGGAAGTCTCTCGGGTCAAGCATCTAACAAGGCTTTTGGCTCTTGGTGACGACGTATgagcaaaacaaaaaaacaaaacgggTGCTGGGTTGGGGGGAGTTAATAATATTGACTCAGATGTCTTATGTCACTGAAGTAGCTTGGTGTGTGCATCAACaaagtgtgtgttttttttcttcagtgcGTGTCCTTGAGCTTCAGCGCTGCTCAGTTGGTATCCATGTGATCGTCGGCGGCCGTGGCGCCACCTAGAGGGGAAGAGGGCGGAGGCTTGGCGGGGACGTCACCCGCATCTCTGCGTTGGTAAAATAGCACGTAGGCTGCTTTTGTCACAATCTGATCCTCCGAGGCAGCCGATACACTACTGTCATCAAAGTAATGCCACTTCCCATCAGCTTTGTTCTTGCCGTAGgctgtgtAGTGgcctcctcccattcctccataGTGGTTGGAGACAGCAATGAGGTCATAAACATAGGGTCCGGCCTTTGGGTCACACACAAACTCAGACATGTTCAGGTCCCTGACAGGGAAGTCCACCACTGTGTCCAGCTTGTCCCTCCAGCAGCGATTGTAGGAAAAACGCTTCAGGTGGACCACCAGGATGCGAGGCAAAGACCACAAGTCAAACTTCTTTGTGGCCTGTTGGTGCTTCTTGCAGGTGGGGCAATACCATGGGTCATGctctcctagtgtctccatggTAGTGAAGAGCTCAATGCATTCCCTCAGAGCCACCGTGGCCTTCTTCTTCGGGGCCTGGAGCATGCTCTCATGCTTCTCATATGCCTCTGCTTCCTGATCGTCATAACACAGTTTCTTTGAGTCCGAGTCCCAGTCGATCGCTACTGTGGAATGTGTATTTAGTTTGAGGATGTTTCCGTCGCAAGGCAGTGGACTGATGTTGGCCGTTCCGTAAGAGTTGACCATGCTGAAGGAGAACAGTTTGGGCGGGGTGCTGGAGCACGGCTTGGTTTTAGGGCCATTCTCCAGGTCTGAGGCGTCCTCCTCCTCTGACTGTCCGTTCTCTGGCTCCGGACTCACCTGTTGATCCATGGCCTCCTCCTCACCTTCACACACCCCGTTCCCGTTGGAGGTTCCTGAATGGTTGCTGCTGTTGCTGGAGCTGCAGGATGCCCCGTCTGACAGGGGGCTACCACTCCCACTCGCTGCAGCGTTGCGATTGGAGGATGTTGCTGAGCACTCTGCTGACTGGCTGCAGCTGGCGGAGGAGGCGGAGGCTGAGGCCCTCCCATCACCGGTGGAGCTTTGAGAGCGCGTCACGTAGCGCCCAATCCTCTCCAGCACCTTCTCGTAGAGCATGTCAGCGGCCAGGTTCTGCCGGGGCACAGTGATGAGCAGGGGCTGGCCAAACAGCATGGTGCCTGTGGAGCCTCCTGTGTGCTTGGAGTGGCGCTCCCTGAAGTACACAGGCAGGTTCATACTCTCTGCATCCTCCTCCGCCACCTCATACACAAAGATGTCATCCTTCTCCATGATTTGGTTGAGGCCATCATCTCGTCTATAGATCTTGTGGAACCGGTGATTGTAAACATCTGCCACCACCATATTCTCAGCAGGGATTCCAGAGAGCCGGGACAAGGCGCTGCACAGGTCTGTCACTGAGCCAAGCTTGGGGACAACCACTCGGTActgcgtAGGTCTGGACTGGGGATCGATGCGGACCAAGAACACTTCCATGGTGCGGTCCTTCTTCATGGGCAGAGGCAGTGTGAGGTAGCAAAATGGGTCAAAGGTCACAGAGACCTTGGCACACTCTGGACACACCAGAGTGGATTTGAACAGGCCATGGAATATGTCCACGATGATGGAGTCATTGCGCAGGCGATGGTTAGTCCAGGCTTCCTTAGCTACAATctcgtcTTTCCGGCCCCCTGCATCCTGCAGGGCCAGGTAAGGCTTCTTTTTAACACGGTTCAGGTCTTCGTGAAGCCCATCCATCAGGAAGGCCAGCAGCTCCTGGGAGTCCTGCTGCTGGTACCCTGAAAACTGGGGGGCGAAGCGGCCCACTTGGGTTTTAAAGGTGCGGGGGGCCACGTAGCTGCTGCGGCTGAGCCACATCTGCTTGACCAGGTCTGCGTAGGACTCTGCAATCTCCCCCCTCATTCCTAATGGATTCTCCCGGTTGATTTCCGCCTCATACTGGTCATCTAGGAAGTATTCCGTGAGAGGGGACGCGTTGCTCAGGCACTGGAGGGCAGAGTTCATGAAGCAGGTGTTGCCTAGGTTACTGAGACCACAAAGACCAGGTTGGGATGGTGACTCTCTGTAGTTGTAGGATGAGCTGTATGAGTTGTAACCTCCCAATCTATTGCCAGAGGAGGTACTGTTGTTCAGTGTACTGCCAGAGTTGCTGCTGTCCCCATTAGTTATTGTTGAGGAGATGGTTGCTGACGAGTTGGAGGAGAGCTTTGGGGAGGTAGTGAAATTCCTGGATGTGGCCGTACTAGATTTTGGATGGGAGGCTTGTCTGGGCCACGTGCCGTCCTCATTCTTGCGTTCGATCACGAGCACCTGGCCTTGGAAGAGACCAGCATCCTGCACGGTGCTGTCTGGCTTGTTCAGCTGCTCGTATGTGTTGCTCATGTATTTGTTCCACAGTCGAGTCTCCTTCCCTGTTGGGATCTCAAATAGCGACCGCATCTCCTTCTCTATGGTGTCTATAGTGTCAGCTTTGCTGAAATGACGTGTGATCACATTGTCCATGTTGTCATTCTCACACAAGTTGAGCTCCAACAGATAGACCTCCACTTTACAGTGCTTGACAAACATACCGTGTTCAACCACCTTTCTGACGATGGGCCGCTGGCCCTCAAGGCAACCATACCAGCAGACAAGCTTGTTCCACGCCTCAGTGGGCACAAGGACATAGTCCAGCTCATCTATAAGGTGCTCCTTCAAGATCTgggtctcatggtCTGAGAACAGGCCTGAGTTGTCAACAGGGCCGGGATAGAGACTGTGCTCTCCAACATTGTACATATCCCAGCTGTCAAATCCCACATACTTCTTCCACTGCTTAAACCACCTGCTATCAATCAGAAACCACTCGTCGCCCTTTCGTAGAGTTGTTTTGAGAAGTGTTCCAATGCTCTGCTTTTGACTTTCGGTTGAAGGTGTCGGTATTTGAGCGGCTACCGGCTCCGGATCGGGGTCTGCCGCACTACCCGAGTCGGGTCCGCCTCCCTCGGCCATCATGCAATAAGTGAGCCAGAGTCGTGAACGCGCGGTAGAAGAACCGCGGATGCACGAGTACCAATTTGTCTTCGTGTGGCTTTCC

Function

NR:

description
ubiquitin carboxyl-terminal hydrolase 4-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1683229 True 5215 TUCP 0.49 22 60972478 60999063

Neighbor

gene id symbol gene type direction distance location
LOC110494272 gpx1 coding upstream 759 60970324 ~ 60971719 (+)
LOC110494264 oxtr coding upstream 372864 60575678 ~ 60599614 (+)
rad18 rad18 coding upstream 463883 60433926 ~ 60508595 (+)
srgap3 srgap3 coding upstream 589067 60265479 ~ 60383800 (+)
LOC110494259 LOC106565584 coding upstream 724568 60244785 ~ 60247910 (+)
LOC110494274 brk1 coding downstream 15662 61014725 ~ 61019187 (+)
LOC110494275 LOC106565569 coding downstream 25645 61024708 ~ 61037602 (+)
LOC110494276 NA coding downstream 40215 61039278 ~ 61043722 (+)
LOC110494279 LOC106565568 coding downstream 55568 61054631 ~ 61129367 (+)
LOC110494281 gnai2 coding downstream 146448 61145511 ~ 61257368 (+)
G1471709 NA non-coding upstream 85749 60886363 ~ 60886729 (+)
G1471687 NA non-coding upstream 124734 60847292 ~ 60847744 (+)
G1471620 NA non-coding upstream 220480 60747535 ~ 60751998 (+)
G1471606 NA non-coding upstream 251595 60719494 ~ 60720883 (+)
G1471569 NA non-coding upstream 317211 60654954 ~ 60655267 (+)
G1471794 NA non-coding downstream 6004 61005067 ~ 61005340 (+)
G1471795 NA non-coding downstream 6539 61005602 ~ 61005828 (+)
G1471732 NA non-coding downstream 23549 61022612 ~ 61023159 (+)
G1471796 NA non-coding downstream 39245 61038308 ~ 61038515 (+)
G1470607 NA other upstream 868471 60101892 ~ 60104007 (+)
G1469076 NA other upstream 2464593 58507297 ~ 58507885 (+)
G1467219 NA other upstream 3358178 57589865 ~ 57614300 (+)
LOC110494206 LOC108254821 other upstream 3424300 57498305 ~ 57548178 (+)
G1467159 LOC106565433 other upstream 3488889 57478797 ~ 57554480 (+)
LOC110494283 LOC106565563 other downstream 557256 61555873 ~ 61558328 (+)
G1473171 LOC106581772 other downstream 1699440 62698503 ~ 62698815 (+)
G1473177 NA other downstream 1711276 62710339 ~ 62711136 (+)
G1474159 NA other downstream 2217885 63216948 ~ 63217594 (+)
srsf3b LOC106565658 other downstream 2659381 63658373 ~ 63663255 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_033093 usp4 coding NC_007117.7 CM002890.2 42345005 ~ 42369186 (-)
grasscarp (Ctenopharyngodon idella) CI01000340_10648767_10660257 USP4 coding CI01000340 null 10648548 ~ 10660257 (-)
bowfin (Amia calva) AMCG00017093 NA coding CM030122.1 CM030122.1 44662419 ~ 44684879 (-)