G1471794


Basic Information

Item Value
gene id G1471794
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 61005067 ~ 61005340 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1683302
atggctgtgcgaagttgcagGATATTGGCGCAAACTCGAACACGCTGTGGTACACATcgattcagagcatcccaaacatgctcaatgggtgacatgtctggtgagtatgcaggcagtggaagaactgggacattttcagcttccaggaattgtgtacatatcCTTGCAACATGAGGCCgtgaattatcatgctgaaacatgaggtgatggcggcagttgatggcatgacaatgggccttaggatgtcgtcatggtatctctgtgtattcaaatt

Function

NR:

description
Transposable element Tc3 transposase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1683302 True 274 lncRNA 0.47 1 61005067 61005340

Neighbor

gene id symbol gene type direction distance location
LOC110494272 gpx1 coding upstream 33348 60970324 ~ 60971719 (+)
LOC110494264 oxtr coding upstream 405453 60575678 ~ 60599614 (+)
rad18 rad18 coding upstream 496472 60433926 ~ 60508595 (+)
srgap3 srgap3 coding upstream 621656 60265479 ~ 60383800 (+)
LOC110494259 LOC106565584 coding upstream 757157 60244785 ~ 60247910 (+)
LOC110494274 brk1 coding downstream 9385 61014725 ~ 61019187 (+)
LOC110494275 LOC106565569 coding downstream 19368 61024708 ~ 61037602 (+)
LOC110494276 NA coding downstream 33938 61039278 ~ 61043722 (+)
LOC110494279 LOC106565568 coding downstream 49291 61054631 ~ 61129367 (+)
LOC110494281 gnai2 coding downstream 140171 61145511 ~ 61257368 (+)
G1471709 NA non-coding upstream 118338 60886363 ~ 60886729 (+)
G1471687 NA non-coding upstream 157323 60847292 ~ 60847744 (+)
G1471620 NA non-coding upstream 253069 60747535 ~ 60751998 (+)
G1471606 NA non-coding upstream 284184 60719494 ~ 60720883 (+)
G1471569 NA non-coding upstream 349800 60654954 ~ 60655267 (+)
G1471795 NA non-coding downstream 262 61005602 ~ 61005828 (+)
G1471732 NA non-coding downstream 17272 61022612 ~ 61023159 (+)
G1471796 NA non-coding downstream 32968 61038308 ~ 61038515 (+)
G1471723 LOC100380707 other upstream 6004 60972478 ~ 60999063 (+)
G1470607 NA other upstream 901060 60101892 ~ 60104007 (+)
G1469076 NA other upstream 2497182 58507297 ~ 58507885 (+)
G1467219 NA other upstream 3390767 57589865 ~ 57614300 (+)
LOC110494206 LOC108254821 other upstream 3456889 57498305 ~ 57548178 (+)
LOC110494283 LOC106565563 other downstream 550979 61555873 ~ 61558328 (+)
G1473171 LOC106581772 other downstream 1693163 62698503 ~ 62698815 (+)
G1473177 NA other downstream 1704999 62710339 ~ 62711136 (+)
G1474159 NA other downstream 2211608 63216948 ~ 63217594 (+)
srsf3b LOC106565658 other downstream 2653104 63658373 ~ 63663255 (+)

Expression


Co-expression Network