G1471720


Basic Information

Item Value
gene id G1471720
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 61133178 ~ 61135571 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1683226
agggggccgaatactttcgcaaggcactgtatatatcttttttttcatTCTTTTTTTGATAAAGAAAGATTGGGTATGGACTTTTCAGTCTATCCTCAGCAACAGTATTAAGGCTAGCATTTCACATTGGTGTGTCTCTTCGATATGTGCACTGAACTATATCAGAATAGCTTTTTCATGGTTCGAAGACGCGCTCTGATGTCTAAAATGGAAGGAAAGCCTGGCTATGAGCTGCCTCCTCAGTATGAGAGTCTGTTATCGAGGTGTTGGAGGTGGAGGGTACTGTTAACCTCATCCGGGATCAGTGGGGGTGTATATCTCTGCATCGTCATGTTTTGATATTGAGATGGCtcactgatctaggaccagtgTTCTAAGTGTAAGAGGAGGCTCTCTACCCAGGTTTGTTGTTATGCTGTTTCTGAACATTTACTAAGAGTAATCAGagataaacaaaaaaaatatttttaaaactcACAGGGTCAATTCATTACGTGGAGAATCAAGGATGGCGTGTGTAAATATAGTTATTTCCAGGACAAGCCCGTTTTTGAGCTTGGTCCCTAACTAAAGATTAGTCTAGTGACATGGTGCCATGATGAGAACACAATGTGATGTCAATGTCTCTCTAACATCCCTGCAAAGTAGGTGGTTAGTTATAGCACTGTCAGCTGATAAGCACAACTTTTTCCGATAGCCAATTAATCAATTGACATGCAAACAATTTATTTGTAAGATTCTCATACATTTTATAGATATGATTTTAACGGACTACCCTTTGTAATAACCATCTATGAACATGTGTCTAAATCCTAAGTACGTTATATAATCCTGTGTATGTTACATtacaaaaatatatgtatttacgGTCTAACATGGTACAAGGATGTTTCCTCCAACTACTTGAAGCTCTTTCTCTCCTGTTCGGTGTCTGCATAGTGCTCAGCAGTCCTGCAATGATTTAAGTGTGAACATGGTGTGTGAACATGGTGTATGTCTGTTCATCTGCTTCAATATGGAAAGAACACAACTGTGTACAGTGGATGTACTGTGAGGATTGTAAGTGTGTCCATGTTGTTGAAATGAAGCATGGATGTATTGTATTTGAATTGTGGTACTTATACACTATATTGTATTGTGAAACAATCAAGGGATTCATTAACCATAAGTGTAACTGAAGTGTTGATCTCTTATCATTATGCAGTATTTAATGAGCATGTAAGATTTAAAAGCCTGACTGAACCTTTCATAATTTCAGACTAGAGTGTTGTCAGGTATGAGTGGCACATAATTTCTGGTCAGTTTTTTAAACATACCTGTCTGCCAACTCCTTGTGTTGAGCAGGTTTGATAGATCAGGTGAAATgtcccttgtctctctctgttgttttgCTTGTGATGAAGTTGCAGATTCAACATTACATACAGTGAGTGCTGTAATATTGTACACGAGTATTGTATCATTGTTCTGTCAAACCTAGTTGTGAGGGCAAAAAAAGTCCTCTCTCAATCAATCATTGATCAACTCTTCCTCAGAGAATGATGACCATTCTGCATGTTCCAGTATATAGAGAGACTGGTCAGTATCAGCCAGCtcagctctgctctctctgtctattactCATTTATGTCATAGCTTAACAGATGATTCTGTTTCCATTTAGATAAAGATCAATGTTTAAAGTCAGATATTTTAACAACATGTTTGTGTTATTCTGATGCCATATACAACTGTTACTGGTATATtattctggggcggcaggtagtctagtggttataacgttggactagtaaccgaaaggttgtaagatcgaatccccgagctgacaaggtaaaaatctgtcattctgcccctgaacaaggcagttaacccactgtccctaggccgtcattgaaaataagaatttgttcttaactgactttcctagttaaataaaaatgtaaaaaatctgtGACATACAGTATCAGCCCTTAAAAATATAATTTATTAGCACCAGGGGGCGGCATTGTAAAAGTGGCTGATCTGATACCTTGACTAGTCTGGTAACTTGCTCCATACAGTATCAAACTCTCATTTccttgtgtgatttaatgaaattgGTATATGAGTTTATAACAACTTTAATGAAATATTGACTTCGGCCAGCATTTATAAATAATGTATATAAATGTAAACCCTTTTCATTCAACATGCATATCTAGTTTGCATAATGTAAATAGCAGGTACAGTTTTAGTTTGATAATTAAAAAGATAAATGTAATCATTTTTAAAGTGCTTTTAAACCTTTTTGCCCTTCCTTTTATGTCTTTATTTTCTTGTATATCAATATATTTGAATACATTGCTGGCAGTAATTGTACTGTAAACAGTGTtgcaataaaaataataaaataac

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1683226 True 2394 lncRNA 0.36 1 61133178 61135571

Neighbor

gene id symbol gene type direction distance location
LOC110494279 LOC106565568 coding upstream 3811 61054631 ~ 61129367 (+)
LOC110494276 NA coding upstream 89456 61039278 ~ 61043722 (+)
LOC110494275 LOC106565569 coding upstream 95576 61024708 ~ 61037602 (+)
LOC110494274 brk1 coding upstream 114437 61014725 ~ 61019187 (+)
LOC110494272 gpx1 coding upstream 161459 60970324 ~ 60971719 (+)
LOC110494281 gnai2 coding downstream 9940 61145511 ~ 61257368 (+)
LOC118940484 NA coding downstream 19324 61154895 ~ 61159504 (+)
LOC110494282 LOC106565567 coding downstream 134914 61270485 ~ 61276247 (+)
LOC110493231 LOC106565565 coding downstream 217914 61353485 ~ 61458471 (+)
LOC110494283 LOC106565563 coding downstream 420302 61555873 ~ 61558328 (+)
G1471796 NA non-coding upstream 94663 61038308 ~ 61038515 (+)
G1471732 NA non-coding upstream 110019 61022612 ~ 61023159 (+)
G1471795 NA non-coding upstream 127350 61005602 ~ 61005828 (+)
G1471853 NA non-coding downstream 1648 61137219 ~ 61137589 (+)
G1471854 NA non-coding downstream 5203 61140774 ~ 61141184 (+)
G1471855 NA non-coding downstream 7871 61143442 ~ 61143759 (+)
G1471858 NA non-coding downstream 9105 61144676 ~ 61144955 (+)
G1471863 NA non-coding downstream 31453 61167024 ~ 61168190 (+)
G1471723 LOC100380707 other upstream 134115 60972478 ~ 60999063 (+)
G1470607 NA other upstream 1029171 60101892 ~ 60104007 (+)
G1469076 NA other upstream 2625293 58507297 ~ 58507885 (+)
G1467219 NA other upstream 3518878 57589865 ~ 57614300 (+)
LOC110494206 LOC108254821 other upstream 3585000 57498305 ~ 57548178 (+)
G1473171 LOC106581772 other downstream 1562932 62698503 ~ 62698815 (+)
G1473177 NA other downstream 1574768 62710339 ~ 62711136 (+)
G1474159 NA other downstream 2081377 63216948 ~ 63217594 (+)
srsf3b LOC106565658 other downstream 2522873 63658373 ~ 63663255 (+)

Expression


Co-expression Network