G1471915 (cdhr4)


Basic Information

Item Value
gene id G1471915
gene name cdhr4
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 61260093 ~ 61260559 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1683425
cCGGCTCAGAATGGCCCAGATGAGCAGACTTGTGACCAGCAGGAGCAGGACGCCGGTAACCGTCACCACAGCAACAAACCAAGGCTCTGGATCCCAGTAGTCTGACATCACTGTGACCACCTGTGGAGGTTTAGCtactgtagtagtagtagtagtagtagtagtaggaacAGTAGTGGTCCAGGGAACTACGTAGATGTAGGCCACAGCCTCAGTGTGATGCCTGCCATCCGACACAGAGATGGTGACTTCAAACATGGTGCGGTCATAAACCCCATCCACCACGTAGGAGAACATGTTTTTGGAGACGAGACTCAACCCGGTCATCAGAAACCGGTCCACTGCAGCAC

Function

symbol description
cdhr4 Predicted to enable calcium ion binding activity. Predicted to be involved in cell adhesion. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane.

NR:

description
cadherin-related family member 4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1683425 True 350 lncRNA 0.53 2 61260093 61260559

Neighbor

gene id symbol gene type direction distance location
LOC110494281 gnai2 coding upstream 2725 61145511 ~ 61257368 (+)
LOC118940484 NA coding upstream 100589 61154895 ~ 61159504 (+)
LOC110494279 LOC106565568 coding upstream 130726 61054631 ~ 61129367 (+)
LOC110494276 NA coding upstream 216371 61039278 ~ 61043722 (+)
LOC110494275 LOC106565569 coding upstream 222491 61024708 ~ 61037602 (+)
LOC110494282 LOC106565567 coding downstream 9926 61270485 ~ 61276247 (+)
LOC110493231 LOC106565565 coding downstream 92926 61353485 ~ 61458471 (+)
LOC110494283 LOC106565563 coding downstream 295314 61555873 ~ 61558328 (+)
LOC110495182 LOC106565603 coding downstream 319080 61579639 ~ 61581869 (+)
trnaf-gaa-81 NA coding downstream 327832 61588391 ~ 61588463 (+)
G1471911 NA non-coding upstream 10254 61248631 ~ 61249839 (+)
G1471868 NA non-coding upstream 81128 61178649 ~ 61178965 (+)
G1471863 NA non-coding upstream 91903 61167024 ~ 61168190 (+)
G1471858 NA non-coding upstream 115138 61144676 ~ 61144955 (+)
G1471855 NA non-coding upstream 116334 61143442 ~ 61143759 (+)
G1471916 NA non-coding downstream 92 61260651 ~ 61260857 (+)
G1471917 NA non-coding downstream 688 61261247 ~ 61261453 (+)
G1471918 NA non-coding downstream 2729 61263288 ~ 61263749 (+)
G1471920 NA non-coding downstream 7473 61268032 ~ 61268267 (+)
G1471921 NA non-coding downstream 7724 61268283 ~ 61268494 (+)
G1471723 LOC100380707 other upstream 261030 60972478 ~ 60999063 (+)
G1470607 NA other upstream 1156086 60101892 ~ 60104007 (+)
G1469076 NA other upstream 2752208 58507297 ~ 58507885 (+)
G1467219 NA other upstream 3645793 57589865 ~ 57614300 (+)
LOC110494206 LOC108254821 other upstream 3711915 57498305 ~ 57548178 (+)
G1473171 LOC106581772 other downstream 1437944 62698503 ~ 62698815 (+)
G1473177 NA other downstream 1449780 62710339 ~ 62711136 (+)
G1474159 NA other downstream 1956389 63216948 ~ 63217594 (+)
srsf3b LOC106565658 other downstream 2397885 63658373 ~ 63663255 (+)

Expression


Co-expression Network