G1471921


Basic Information

Item Value
gene id G1471921
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 61268283 ~ 61268494 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1683431
GTCTGTTTGCTGGCATACTGTAAAATATTTGCAATCCTTCAAGTAAACATCATCAGCAAGAGCACAATGCAGCCTCACATATTTTAAAGATTTAACTGTTTCCCATTTGGATTGCTGGTTCCGCAAGGTTCTCCCAGAGACTAATCCTTGTGACTAATTGAACTCATGTGACCTCAGGGACCAACCTGAACTCAGGgatagatgtaacatag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1683431 True 212 lncRNA 0.41 1 61268283 61268494

Neighbor

gene id symbol gene type direction distance location
LOC110494281 gnai2 coding upstream 10915 61145511 ~ 61257368 (+)
LOC118940484 NA coding upstream 108779 61154895 ~ 61159504 (+)
LOC110494279 LOC106565568 coding upstream 138916 61054631 ~ 61129367 (+)
LOC110494276 NA coding upstream 224561 61039278 ~ 61043722 (+)
LOC110494275 LOC106565569 coding upstream 230681 61024708 ~ 61037602 (+)
LOC110494282 LOC106565567 coding downstream 1991 61270485 ~ 61276247 (+)
LOC110493231 LOC106565565 coding downstream 84991 61353485 ~ 61458471 (+)
LOC110494283 LOC106565563 coding downstream 287379 61555873 ~ 61558328 (+)
LOC110495182 LOC106565603 coding downstream 311145 61579639 ~ 61581869 (+)
trnaf-gaa-81 NA coding downstream 319897 61588391 ~ 61588463 (+)
G1471920 NA non-coding upstream 16 61268032 ~ 61268267 (+)
G1471918 NA non-coding upstream 4534 61263288 ~ 61263749 (+)
G1471917 NA non-coding upstream 6830 61261247 ~ 61261453 (+)
G1471916 NA non-coding upstream 7426 61260651 ~ 61260857 (+)
G1471915 cdhr4 non-coding upstream 7724 61260093 ~ 61260559 (+)
G1472211 NA non-coding downstream 20151 61288645 ~ 61288866 (+)
G1472215 NA non-coding downstream 22375 61290869 ~ 61291131 (+)
G1472219 NA non-coding downstream 25550 61294044 ~ 61294373 (+)
G1472260 NA non-coding downstream 55210 61323704 ~ 61323940 (+)
G1472262 NA non-coding downstream 60323 61328817 ~ 61329672 (+)
G1471723 LOC100380707 other upstream 269220 60972478 ~ 60999063 (+)
G1470607 NA other upstream 1164276 60101892 ~ 60104007 (+)
G1469076 NA other upstream 2760398 58507297 ~ 58507885 (+)
G1467219 NA other upstream 3653983 57589865 ~ 57614300 (+)
LOC110494206 LOC108254821 other upstream 3720105 57498305 ~ 57548178 (+)
G1473171 LOC106581772 other downstream 1430009 62698503 ~ 62698815 (+)
G1473177 NA other downstream 1441845 62710339 ~ 62711136 (+)
G1474159 NA other downstream 1948454 63216948 ~ 63217594 (+)
srsf3b LOC106565658 other downstream 2389950 63658373 ~ 63663255 (+)

Expression


Co-expression Network