G1472268


Basic Information

Item Value
gene id G1472268
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 61332084 ~ 61333232 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1683822
TGAACTGATAAGCTAGCTGTTTTTATTTTGAACAACAATAGATGGCAGAAGATTGGTTGAAGATGGCAGAGTAAACTCATGCTAAAATGTTTATACTATtatactgagccatttacttgaTGTTCGGattcttatttttttaataatttcttattgttgttgtatTGTCGAGGAGGAACCTACAAGTAAACATTTAGTTAGaaggtgtataccatgtgtatcccatACATACCACAGAAAAAACTTGAAACCTGAACTTGAAACAAAAGCATGTAGATAGAAATATGTCTTTGAAAATGTCTttgagagggtgaatgggcaagacaaaatatttatgtacctttgaacagggtatggtagtaggtgccaggcgcaccggtttatgtcaagaactgcaacgctgctgggtttttcacactcagcattttcccatgtgtatcaagaatggtccaccacccaaaggacatccaatcaacttcacacaactgtgcaCCTCTGGTGCATcttaatattaggaagttgttcttaatgttttgtacattcagtgtatatcAAGTGccgttgccaaaaggcacctaaaggactcgcagactatgagaaacaagattatctggtctgatgaaaccaagatttaactttttggcctgaatgtcaagtgtcacatctggagtaaaccaggcaccatccctacggtgaagcatggtggtggcagtatcatgctgtggggatgtttttcagcggcagggactgggagactagtcaggatcgagggaaagatgaatggagcaaagtacagagagagccttgatgaaaacatgctccagagcactcaggacctgagactggggtaaaggttcaccttccaacagggcaacgaccctaagcacacagccaagacaacgcaggagtggcttgggagaaatgggagaaacaccccaaaaacatgtgtgcaaagcttgtagcgtcatacccaagaagattcaagcctgtaatcactgccaatggtgcttcaacacaatactgagtaaagggtctgaatacttatgcaaatgtcatatttccattttttttatttttttatacatttgcaacaattactaaaaacctttttttctttgtcattgtggggtattgtgtgtagattgatga
>TU1683824
TGAACTGATAAGCTAGCTGTTTTTATTTTGAACAACAATAGATGGCAGAAGATTGGTTGAAGATGGCAGAGTAAACTCATGCTAAAATGTTTATACTATtatactgagccatttacttgaTGTTCGGattcttatttttttaataatttcttattgttgttgtatTGTCGAGGAGGAACCTACAAGTAAACATTTAGTTAGaaggtgtataccatgtgtatcccatACATACCACAGAAAAAACTTGAAACCTGAACTTGAAACAAAAGCATGTAGATAGAAATATGTCTTTGAAAATGTCTttgagagggtgaatgggcaagacaaaatatttatgtacctttgaacagggtatggtagtaggtgccaggcgcaccggtttatgtcaagaactgcaacgctgctgggtttttcacactcagcattttcccatgtgtatcaagaatggtccaccacccaaaggacatccaatcaacttcacacaactgtgcaCCTCTGGTGCATcttaatattaggaagttgttcttaatgttttgtacattcagtgtatatcAAGTGccgttgccaaaaggcacctaaaggactcgcagactatgagaaacaagattatctggtctgatgaaaccaagatttaactttttggcctgaatgtcaagtgtcacatctggagtaaaccaggcaccatccctacggtgaagcatggtggtggcagtatcatgctgtggggatgtttttcagcggcagggactgggagactagtcaggatcgagggaaagatgaatggagcaaagtacagagagagccttgatgaaaacatgctccagagcactcaggacctgagactggggtaaaggttcaccttccaacagggcaacgaccctaagcacacagccaagacaacgcaggagtggcttgggagaaatgggagaaacaccccaaaaacatgtgtgcaaagcttgtagcgtcatacccaagaagattcaagcctgtaatcactgccaatggtgcttcaacacaatactgagtaaa
>TU1683821
attgttgttgtatTGTCGAGGAGGAACCTACAAGTAAACATTTAGTTAGaaggtgtataccatgtgtatcccatACATACCACAGAAAAAACTTGAAACCTGAACTTGAAACAAAAGCATGTAGATAGAAATATGTCTTTGAAAATGTCTttgagagggtgaatgggcaagacaaaatatttatgtacctttgaacagggtatggtagtaggtgccaggcgcaccggtttatgtcaagaactgcaacgctgctgggtttttcacactcagcattttcccatgtgtatcaagaatggtccaccacccaaaggacatccaatcaacttcacacaactgtgcaCCTCTGGTGCATcttaatattaggaagttgttcttaatgttttgtacattcagtgtatatcAAGTGccgttgccaaaaggcacctaaaggactcgcagactatgagaaacaagattatctggtctgatgaaaccaagatttaactttttggcctgaatgtcaagtgtcacatctggagtaaaccaggcaccatccctacggtgaagcatggtggtggcagtatcatgctgtggggatgtttttcagcggcagggactgggagactagtcaggatcgagggaaagatgaatggagcaaagtacagagagagccttgatgaaaacatgctccagagcactcaggacctgagactggggtaaaggttcaccttccaacagggcaacgaccctaagcacacagccaagacaacgcaggagtggcttgggagaaatgggagaaacaccccaaaaacatgtgtgcaaagcttgtagcgtcatacccaagaagattcaagcctgtaatcactgccaatggtgcttcaacacaatactgagtaaa
>TU1683823
attgttgttgtatTGTCGAGGAGGAACCTACAAGTAAACATTTAGTTAGaaggtgtataccatgtgtatcccatACATACCACAGAAAAAACTTGAAACCTGAACTTGAAACAAAAGCATGTAGATAGAAATATGTCTTTGAAAATGTCTttgagagggtgaatgggcaagacaaaatatttatgtacctttgaacagggtatggtagtaggtgccaggcgcaccggtttatgtcaagaactgcaacgctgctgggtttttcacactcagcattttcccatgtgtatcaagaatggtccaccacccaaaggacatccaatcaacttcacacaactgtgcaCCTCTGGTGCATcttaatattaggaagttgttcttaatgttttgtacattcagtgtatatcAAGTGccgttgccaaaaggcacctaaaggactcgcagactatgagaaacaagattatctggtctgatgaaaccaagatttaactttttggcctgaatgtcaagtgtcacatctggagtaaaccaggcaccatccctacggtgaagcatggtggtggcagtatcatgctgtggggatgtttttcagcggcagggactgggagactagtcaggatcgagggaaagatgaatggagcaaagtacagagagagccttgatgaaaacatgctccagagcactcaggacctgagactggggtaaaggttcaccttccaacagggcaacgaccctaagcacacagccaagacaacgcaggagtggcttgggagaaatgggagaaacaccccaaaaacatgtgtgcaaagcttgtagcgtcatacccaagaagattcaagcctgtaatcactgccaatggtgcttcaacacaatactgagtaaagggtctgaatacttatgcaaatgtcatatttccattttttttatttttttatacatttgcaacaattactaaaaacctttttttctttgtcattgtggggtattgtgtgtagattgatga

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1683822 False 1149 lncRNA 0.40 1 61332084 61333232
TU1683824 False 1029 lncRNA 0.42 1 61332084 61333112
TU1683821 False 877 lncRNA 0.44 1 61332236 61333112
TU1683823 True 997 lncRNA 0.42 1 61332236 61333232

Neighbor

gene id symbol gene type direction distance location
LOC110494282 LOC106565567 coding upstream 55837 61270485 ~ 61276247 (+)
LOC110494281 gnai2 coding upstream 74716 61145511 ~ 61257368 (+)
LOC118940484 NA coding upstream 172580 61154895 ~ 61159504 (+)
LOC110494279 LOC106565568 coding upstream 202717 61054631 ~ 61129367 (+)
LOC110494276 NA coding upstream 288362 61039278 ~ 61043722 (+)
LOC110493231 LOC106565565 coding downstream 20253 61353485 ~ 61458471 (+)
LOC110494283 LOC106565563 coding downstream 222641 61555873 ~ 61558328 (+)
LOC110495182 LOC106565603 coding downstream 246407 61579639 ~ 61581869 (+)
trnaf-gaa-81 NA coding downstream 255159 61588391 ~ 61588463 (+)
LOC110494284 LOC106565564 coding downstream 343733 61676965 ~ 61684917 (+)
G1472264 NA non-coding upstream 840 61330347 ~ 61331244 (+)
G1472262 NA non-coding upstream 2412 61328817 ~ 61329672 (+)
G1472260 NA non-coding upstream 8144 61323704 ~ 61323940 (+)
G1472219 NA non-coding upstream 37711 61294044 ~ 61294373 (+)
G1472215 NA non-coding upstream 40953 61290869 ~ 61291131 (+)
G1472271 NA non-coding downstream 935 61334167 ~ 61334495 (+)
G1472275 NA non-coding downstream 4771 61338003 ~ 61338410 (+)
G1472281 NA non-coding downstream 7900 61341132 ~ 61341435 (+)
G1472294 NA non-coding downstream 19653 61352885 ~ 61353103 (+)
G1472329 NA non-coding downstream 122904 61456136 ~ 61457003 (+)
G1471723 LOC100380707 other upstream 333021 60972478 ~ 60999063 (+)
G1470607 NA other upstream 1228077 60101892 ~ 60104007 (+)
G1469076 NA other upstream 2824199 58507297 ~ 58507885 (+)
G1467219 NA other upstream 3717784 57589865 ~ 57614300 (+)
LOC110494206 LOC108254821 other upstream 3783906 57498305 ~ 57548178 (+)
G1473171 LOC106581772 other downstream 1365271 62698503 ~ 62698815 (+)
G1473177 NA other downstream 1377107 62710339 ~ 62711136 (+)
G1474159 NA other downstream 1883716 63216948 ~ 63217594 (+)
srsf3b LOC106565658 other downstream 2325212 63658373 ~ 63663255 (+)

Expression


Co-expression Network