G1473420 (LOC106565550)


Basic Information

Item Value
gene id G1473420
gene name LOC106565550
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 61923577 ~ 61927745 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1685080
TCGGTTCTGACCGTTCATCTTATGGTAGAGTCCACAGGCGTTGCACAAGTAGTGGCCCGTACCATCCCGTCGCCACAGGGGGGTAGAGGTGGCTCCACAGTTGACACACTCACGCCCCTCTGAGCAGCATGCTGAGCACGACCGAGTTTTGCTTTTACATTTCGGGGTGAAGCTGGAGGATGATCCTCCGAGCAGGCTGCCGGGGTGGAAGAGACTGCCCCCGTAGTCATGCGCTGCCGGGAGAGAGTATGTGGGGTAGGTCGGTATGGGGTGGTGGGTGGATGGGGTCTGTGCGCTCATTGAGGCCAGGCTGCTCCGGAGAGGACTGGAACCCTCCATTTTCATGCCTTCAGAAATTGACATTTGATACTTGATAGAATCTTTCTCGTCCATTCTCGGGGTAGAGGATGAGGGTGAGGCGGCCCCGAGGTCTGGGGACACATCTTTCGGCGGGGTAGGGGGGAAACTGTAGAGATGTGGACTCGAATGGGACGCGGGTGTTAACGAGGATGCCGAGGCCGTGCTGGCGTTGCTGCTGCAGGGGTATAGGCCACCATGAGCCCCGGAGCCTGAGGCGTGTAGCCCGGTCTTGCTGAAGTGGCTGACCGCCCATGCGTTGTGATGGTGGGCCGCTGAGAGGGCTGCTTTGCCGGGCTCTAGCCATGAAATCCCCGGGCTATGCAGGAGATGTGGCCGGCAGACCTGACCCCCAGCGAAGCGAgctgtaagaatagtagaataata

Function

NR:

description
endothelial transcription factor GATA-2 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1685080 True 744 lncRNA 0.59 2 61923577 61927745

Neighbor

gene id symbol gene type direction distance location
LOC110494293 LOC106565552 coding downstream 37696 61870568 ~ 61885881 (-)
LOC110494294 LOC106565554 coding downstream 54693 61867682 ~ 61868884 (-)
LOC110494296 LOC103358720 coding downstream 56984 61860339 ~ 61866593 (-)
LOC110494280 cdhr4 coding downstream 656789 61256901 ~ 61266788 (-)
LOC110494273 LOC106565570 coding downstream 908844 61008011 ~ 61014733 (-)
LOC118940485 NA coding upstream 78481 62006226 ~ 62039982 (-)
LOC110493233 NA coding upstream 115511 62043256 ~ 62056425 (-)
LOC110494301 LOC106565546 coding upstream 153502 62081247 ~ 62100547 (-)
prkcda LOC106565545 coding upstream 184419 62112164 ~ 62138725 (-)
LOC110494304 LOC106565544 coding upstream 226669 62154414 ~ 62210252 (-)
G1473389 NA non-coding downstream 72047 61817749 ~ 61851530 (-)
G1473385 NA non-coding downstream 110587 61811412 ~ 61812990 (-)
G1473378 NA non-coding downstream 119514 61795091 ~ 61804063 (-)
G1473344 NA non-coding downstream 134030 61757669 ~ 61789547 (-)
G1473257 NA non-coding downstream 324021 61599337 ~ 61599556 (-)
LOC110494310 NA non-coding upstream 399772 62327517 ~ 62329214 (-)
G1473734 NA non-coding upstream 576734 62504479 ~ 62505046 (-)
G1473767 NA non-coding upstream 646989 62574734 ~ 62574962 (-)
G1473803 NA non-coding upstream 702023 62629768 ~ 62630862 (-)
G1471564 NA other downstream 1284242 60638180 ~ 60639335 (-)
G1471219 srgap3 other downstream 1546985 60375633 ~ 60376864 (-)
LOC110494257 LOC106565586 other downstream 1816390 60104033 ~ 60110249 (-)
LOC110494253 LOC106565590 other downstream 1927251 59990975 ~ 59999740 (-)
G1470802 NA other downstream 2246883 59674541 ~ 59676694 (-)
ccdc174 NA other upstream 318634 62246379 ~ 62250654 (-)
G1473866 NA other upstream 802408 62730153 ~ 62730503 (-)
G1474395 NA other upstream 1120894 63048639 ~ 63100752 (-)
G1474425 LOC106565679 other upstream 1206080 63133825 ~ 63145087 (-)
LOC110494346 LOC106565668 other upstream 1479160 63403851 ~ 63409818 (-)

Expression


Co-expression Network