G1472961 (LOC106565537)


Basic Information

Item Value
gene id G1472961
gene name LOC106565537
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 62356922 ~ 62359002 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1684587
ACTTAAATGTTACATTAACATTTTCAAAACATGAAAATACCATAGAAAAATAACATTGTACAAAACCATTTTTTGTTCTTATAAGTGAAAACATATACAAAGCTTATAATCGGGCCATTTCTATTAGTGCTTCACACACTCACAGTGCCTTACATTTATAATACAGTATCATATTTCAAAGAAAAGAAAAACATCCCAAAGCCTATGTTATTATGGCTAAAAAACGTGATCAATGTAAACCTGTAACAGACACATTAATGGctgaacttcctgatttggcTTCTTTTTCGGCTTGGTCATTAAGAAATGCAGCGGCCATGACTGAAGCCAAACAAGAGTTGTCTTGTAAGGTGGTTTAATGtgggtgtctcgtgtgtgtgttcgtatgtGGCAAGCGTTTGTACATTCACTCTACCAAAACAGTACAAAGTTACATTAACTAACCCTTCTAGATATCTTGAAACCAGGTCTTGTGTCTTAAAGTTGCCATAGGTATcgaatgtcaaatcaaattgacTACGGGCATTACAACCTCCAAATTGATGACTGCTTGGTGGGCAGGATTGAAATAAACCCAACCCCAGGAAAACTATTACGGTACCGTTTATTCTGTGACATAAAATGTTTTCCTATCATCTCGCAAATCTCTGTTCTgaacgagactgactttatgattTACACTTTGTGTTGACACTAGAatgaatgtttctgactcattGATGCCACATAGGCCATTTTTAAACAAGAAGTCGCTTTTTAGTGTCAGTTGCTCTTTAAAATACAAAAATGGCACACAGAGATATGTCTTAAATATTTTTGATATTTGGATGGCTCTGGATTGGTTTCTCCCCTCTCCTGGTCCTTCATTGAATTCAATGGACATGGAAAAGCTACAGAGGCAGCTATCCCCTTCAGGTTTCATGAAGGAGGTCCACTTCCCTACGTGCTCACAGCGTTAGGCTTCAGGAACAACCTGCTCTGCCAGTAGTCTGGATTGTCAAATGAGCGATCTCCGCCACCAGGCTCCCCCACCCCTACCCCTGCACGCACTTTTACAAATGCCCCCATCCCTGTGTGCTGACCCCCCATGCCCCCCACTacaccctcaccttctccctgcaAATTCTCATACTCCACTGGGTCCCCAGCTCCAGGGGCAGCCAGGGAATCCATGTCCTCGTACtcatccacctctccctctcctcctctctgcatcCTCAGCCCCTCCCTGCTTCGCAGAGCCTGCCGCAGCTTGGGTTGCCTGTTAGTGTAATGATAGTCGTCCTCTTCTACGTATTCAtcgtcctcttcctccacctctctctcgtctctcatcCGCTGTTTGTGCATAGCTCCAGGATGAGGGACAACTCGTGTTGGGGGATCGTCTGGTCTTTCACTGGCCTCTGGTCCAACACTTCGAATGTCCATGTACTCATATTCAACGTCACCAGAGCCCCTTTCCTCCATTTTATCTGAATCAGAGTTGAGGGCAGGGAATTCATAGTCCTGGTGTTCTTCATGCTTGGTTTGGCCTCCCCTGTTCTCCCCAGCTGATGTCCTGTGCCCCGTGCACTCTGTATACTCTGTGTCCAGGGATGGCAGAGAAGAGCGTTGCCTCTTGTTCATCTTCAACCAATGGCCATCTTTGGAGTGGCCAGGCTGCTGCCTGGGGGAGAGAGTCATCATGAACGCCTGTTTGTTCATGTACTCATATTCTTCACAGGAACTGTCATTGTCCTCCGAGGGTCCTGACGGGTATGAGGGAACCTTGGACGTCCTCCCGTGAGGAAGGGTGACCCGTGAGCTAGACAGTAG

Function

NR:

description
receptor tyrosine-protein kinase erbB-3-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1684587 True 1818 lncRNA 0.46 2 62356922 62359002

Neighbor

gene id symbol gene type direction distance location
LOC110494308 LOC106565540 coding upstream 70084 62282838 ~ 62286838 (+)
ghrl ghrl coding upstream 102112 62210022 ~ 62254810 (+)
LOC110494300 ruvb1 coding upstream 284998 62062599 ~ 62071924 (+)
LOC110494299 LOC106565550 coding upstream 423075 61921680 ~ 61933847 (+)
si:ch211-157b11.8 LOC106565551 coding upstream 462729 61887592 ~ 61894193 (+)
LOC110494317 LOC106565535 coding downstream 46411 62405413 ~ 62417692 (+)
LOC110493234 NA coding downstream 67542 62426544 ~ 62433065 (+)
LOC110494314 LOC106565532 coding downstream 112929 62471931 ~ 62491150 (+)
LOC110494318 rheb coding downstream 132969 62491971 ~ 62496531 (+)
LOC100136666 LOC100136666 coding downstream 147854 62506856 ~ 62528639 (+)
G1472883 NA non-coding upstream 141350 62214323 ~ 62215572 (+)
G1472762 NA non-coding upstream 244194 62028290 ~ 62112728 (+)
G1472820 NA non-coding upstream 249486 62106012 ~ 62107436 (+)
G1472701 NA non-coding upstream 416445 61878581 ~ 61940477 (+)
G1472966 LOC106565537 non-coding downstream 8841 62367843 ~ 62370614 (+)
G1473067 NA non-coding downstream 192798 62551800 ~ 62552243 (+)
G1473082 NA non-coding downstream 206747 62565749 ~ 62566066 (+)
G1473083 NA non-coding downstream 207092 62566094 ~ 62566299 (+)
G1473085 NA non-coding downstream 209218 62568220 ~ 62568458 (+)
LOC110494283 LOC106565563 other upstream 799884 61555873 ~ 61558328 (+)
G1471723 LOC100380707 other upstream 1357859 60972478 ~ 60999063 (+)
G1470607 NA other upstream 2252915 60101892 ~ 60104007 (+)
G1469076 NA other upstream 3849037 58507297 ~ 58507885 (+)
G1467219 NA other upstream 4742622 57589865 ~ 57614300 (+)
G1473171 LOC106581772 other downstream 339501 62698503 ~ 62698815 (+)
G1473177 NA other downstream 351337 62710339 ~ 62711136 (+)
G1474159 NA other downstream 857946 63216948 ~ 63217594 (+)
srsf3b LOC106565658 other downstream 1299442 63658373 ~ 63663255 (+)
tmcc2 LOC106565656 other downstream 1325088 63684043 ~ 63691033 (+)

Expression


Co-expression Network