G1472966 (LOC106565537)


Basic Information

Item Value
gene id G1472966
gene name LOC106565537
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 62367843 ~ 62370614 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1684592
ctcagtccccCTGTCTCACCACACTGGCTCTGGAGACGATTCTCCTTGACGTCAATGTTCTTCTGGCGGCGCTGTGGGCGGGAGCTGCTGCTGAAGAGGCGTGTCCAGTTGACGGTGTGGTGGTAGCACAGCTTCTTGTTTCCTGTGATGTAGACGCCGCCGTCGTTGATCCTCCGCAGCGAGCGCAGCCCCAGAGATGTCAGGGACGGGATGCGCATCACCAGCAGGGAGTAGCCCCTGAATAAGAGGGAGGAGTCAATAAcgcaggaggaggaagatgagcagggcagaggggtagagaggcAGTGGGAGAGTGGGTCAAAGgtgagggagcagggagaggagaaccATCAGGGTGGAGGGAATGGAGGATACTTCAGACAAAATATGTACAAATGTATACTTTAGCTGGGAACATCAAGTCAGGACAGATAAAAAAATGAATCGCACATTCGTCATTGCTGCTCCCAAACACTAATTGTCTACCAGCAGACAGAAAATGTGTATGTTGCTATGTAGGGAATGTATATATCATTGTCTTTGAGATTAGTTTGATCAATACCACCTATTCACCCAGTGACTCCCAGTACCCAACTCTTCACTTATACGTAGAAGTGTGTATGGTCATATGGTATGATCAAGTTCAAAGTACAATCATGAGGATAGTGGTTACCTTATACCTCAACACAAATCCCTCACCCACCACCACCAACTGAGACACTTCTCATACAGTTCAAGACTCAACACATAACCAATTCTGAGTAAAATGTTGCTTAGCATAGTCACAGGTGATAAGGAGGACATTGTGTAAGTATGATGTCATACCAGGAAGATTAATAAAACAGCTGTCACAAACACTACTGTACCTTTTAGAGCGCCCTCCTCTGATGGGAcaaacaagacagagagagagacagaagagacagaagagacagagagacagcgagacagagacagaatagatagagagacagaagagacagagagacagagagacagaagagacagagacagaagagacagagagacagaagagacagagacagaagagacaggagagacagagagagaagagacagagagacagagagacagagagagaagagagagagagacagaagagacagaagacagagagacagagagagaagagacagagagacagaagagacagaagagacaagagagacagagagacagagagagaagagacagagagacagaagagacagaagagacataagacagagagacagagagagaagagacagagagacagagagagaagagacagagagacagagagagaagagacatagagacagaagagacagagagacagaagagacagaagagacagaagagacagagacagaagagacagaagagacagagaggagaacagagtagagaaTGAGAAAAAGGGTGAAAGAGGATGAGAGATAAAGTGGTGACAAGACACACAAGACACAACAGGTCAGTCTATGCATGCATGTCTACAATGCAGTTGAACACAGATGGAAATGGTGATGGGTTCAGTGTACACATACTGTAGAATGTGAACAAGATATAATTCTTtagtgcagagagacagagacacaagtATAACGTCagacagtgagggagacagacagacagattgtcACCTGTAAAGGGTTCTTCCTTGTATGGTTGTCAAGTTGGAGAACACTGACAGGTCTGTCAGAGTTTCCGGCCATGACTGGATACTCAGAATGTCTGGCAACCGGAGAAGGTGTGTTACAAACACagaacaccatacaaacacaccaCTAAACTGACACATGCACTTGaaacttcaacacacacacacattcatacacacacatacctgtgaTCTCTCGCACAGTTCtgaagatcttcagtttctctgGATCCAAAGCTGTGATGTTGTTGTAGGGATCACTGTGTGTGGAAGATCAACCAACAGAGAAGTAGTGAGGACCAAAGAAAAGGGAACAAATTGACATTACTGTGTCATTTTgaatatacagatgtaggatcttcatttgagacagtttgctacagcaggaaaacgaACCTGCAGAAACAGGACTTGTGAATTATTatctggattataattaatggattttttttg
>TU1684593
ctcagtccccCTGTCTCACCACACTGGCTCTGGAGACGATTCTCCTTGACGTCAATGTTCTTCTGGCGGCGCTGTGGGCGGGAGCTGCTGCTGAAGAGGCGTGTCCAGTTGACGGTGTGGTGGTAGCACAGCTTCTTGTTTCCTGTGATGTAGACGCCGCCGTCGTTGATCCTCCGCAGCGAGCGCAGCCCCAGAGATGTCAGGGACGGGATGCGCATCACCAGCAGGGAGTAGCCCCTGAATAAGAGGGAGGAGTCAATAAcgcaggaggaggaagatgagcagggcagaggggtagagaggcAGTGGGAGAGTGGGTCAAAGgtgagggagcagggagaggagaaccATCAGGGTGGAGGGAATGGAGGATACTTCAGACAAAATATGTACAAATGTATACTTTAGCTGGGAACATCAAGTCAGGACAGATAAAAAAATGAATCGCACATTCGTCATTGCTGCTCCCAAACACTAATTGTCTACCAGCAGACAGAAAATGTGTATGTTGCTATGTAGGGAATGTATATATCATTGTCTTTGAGATTAGTTTGATCAATACCACCTATTCACCCAGTGACTCCCAGTACCCAACTCTTCACTTATACGTAGAAGTGTGTATGGTCATATGGTATGATCAAGTTCAAAGTACAATCATGAGGATAGTGGTTACCTTATACCTCAACACAAATCCCTCACCCACCACCACCAACTGAGACACTTCTCATACAGTTCAAGACTCAACACATAACCAATTCTGAGTAAAATGTTGCTTAGCATAGTCACAGGTGATAAGGAGGACATTGTGTAAGTATGATGTCATACCAGGAAGATTAATAAAACAGCTGTCACAAACACTACTGTACCTTTTAGAGCGCCCTCCTCTGATGGGAcaaacaagacagagagagagacagaagagacagaagagacagagagacagcgagacagagacagaatagatagagagacagaagagacagagagacagagagacagaagagacagagagacagaagagacagagacagaagagacaggagagacagagagagaagagaca

Function

NR:

description
receptor tyrosine-protein kinase erbB-3-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1684592 False 2116 lncRNA 0.45 2 62367843 62369994
TU1684593 True 1063 lncRNA 0.48 2 62367843 62370614
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Neighbor

gene id symbol gene type direction distance location
LOC110494308 LOC106565540 coding upstream 81005 62282838 ~ 62286838 (+)
ghrl ghrl coding upstream 113033 62210022 ~ 62254810 (+)
LOC110494300 ruvb1 coding upstream 295919 62062599 ~ 62071924 (+)
LOC110494299 LOC106565550 coding upstream 433996 61921680 ~ 61933847 (+)
si:ch211-157b11.8 LOC106565551 coding upstream 473650 61887592 ~ 61894193 (+)
LOC110494317 LOC106565535 coding downstream 34799 62405413 ~ 62417692 (+)
LOC110493234 NA coding downstream 55930 62426544 ~ 62433065 (+)
LOC110494314 LOC106565532 coding downstream 101317 62471931 ~ 62491150 (+)
LOC110494318 rheb coding downstream 121357 62491971 ~ 62496531 (+)
LOC100136666 LOC100136666 coding downstream 136242 62506856 ~ 62528639 (+)
G1472961 LOC106565537 non-coding upstream 8841 62356922 ~ 62359002 (+)
G1472883 NA non-coding upstream 152271 62214323 ~ 62215572 (+)
G1472762 NA non-coding upstream 255115 62028290 ~ 62112728 (+)
G1472820 NA non-coding upstream 260407 62106012 ~ 62107436 (+)
G1473067 NA non-coding downstream 181186 62551800 ~ 62552243 (+)
G1473082 NA non-coding downstream 195135 62565749 ~ 62566066 (+)
G1473083 NA non-coding downstream 195480 62566094 ~ 62566299 (+)
G1473085 NA non-coding downstream 197606 62568220 ~ 62568458 (+)
G1473120 NA non-coding downstream 240523 62611137 ~ 62611843 (+)
LOC110494283 LOC106565563 other upstream 810805 61555873 ~ 61558328 (+)
G1471723 LOC100380707 other upstream 1368780 60972478 ~ 60999063 (+)
G1470607 NA other upstream 2263836 60101892 ~ 60104007 (+)
G1469076 NA other upstream 3859958 58507297 ~ 58507885 (+)
G1467219 NA other upstream 4753543 57589865 ~ 57614300 (+)
G1473171 LOC106581772 other downstream 327889 62698503 ~ 62698815 (+)
G1473177 NA other downstream 339725 62710339 ~ 62711136 (+)
G1474159 NA other downstream 846334 63216948 ~ 63217594 (+)
srsf3b LOC106565658 other downstream 1287830 63658373 ~ 63663255 (+)
tmcc2 LOC106565656 other downstream 1313476 63684043 ~ 63691033 (+)

Expression

G1472966(LOC106565537) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 1.5.
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G1472966(LOC106565537) Expression in each Bioproject

Bar chart with 15 bars.
G1472966(LOC106565537) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 20.
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Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
eurasian perch (Perca fluviatilis) G38940 erbb3,LOC106565537 non-coding NC_053115.1 CM020912.1 15892747 ~ 15892996 (-)