G1473134



Basic Information


Item Value
gene id G1473134
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 62625405 ~ 62629117 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>TU1684772
gttgaaaccggctcggcccatagagacggaccccaaagtttctgtccgatagctcgttcaaggaccccgtagcaaggcatggaaaatagtggattttcagcaccaattagggtttttctcggacaccaaatgacctatcgagccgaaactcgggattcggggtcgcctcacataggacttcacataatgtccgaactggacccgcagctagaacgtaactatgtgttttacctttttattatgttttaaactagaggcgctgtgaattatgggactgctctgacatatatgatagttggcatctaaatgagtaggaaacagtgggtttggtgtcataatgacatctaattgactgatggacactgacttgctagttgacttttgtacatttgcaatatgtttaaacagagagggaccatcaccaaaatggcattctgaaatcaacacaaaaaatggcatcaccatagtctccagactgtgctgagttcaacgagctatcccgcttgaccgtagctcgctcggtctaggcgcagcaaccattagaatattaggcccaaaatgaagcctgcaccacaatgtcatttgcttttgggtgagagtgagagaaccgttagggtgagaagaaaaattccaccataggaatgttcctaaggtcctcccgatctcaacaagcctaaccttgaccgtgtggcattaacccttaacagtaaaacagtgttttttgatctcacagattacagtgtcatctctccccataggaatacattgcctgcacccctaatttcaacctgaggcctatgtgggttatgaatgccgtatgaacctgtcttcggtaccagtccatcaggccactatgaggtctacctgtgtcgattctaagcttcctggaccaaccggaagtggttaaaatgcccctaaaagtgtttacccatacactgcatgcagtttgatagacatagtgcattcaaccctgtgtagatcagtcaattcttaacgtaaggacttaaaactcaggattctgtaacagcataccccaatgaggatatgtggtgacttatagcttcctgtgccaaccggaagtgccataattggtgtctcaggggctgtttcgaagggttaaaaaagtctgatctttccaaaacttcatatgtgtgattaggcaacccccatgaactgtaaatcagtcatttttcccaaaaaaaatcaaaggaaaaaaaaattgcactaaaacacaacttggatggagggacgtattggggtgcgtagagacagacagtggctccaatagttagctttgttggagctaaaaaagaaccgtcggacctagagttccgaaactttagaaacctgttctagac

Function


GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU1684772 True 1358 lncRNA 0.44 2 62625405 62629117

Neighbor


gene id symbol gene type direction distance location
LOC100136666 LOC100136666 coding upstream 96766 62506856 ~ 62528639 (+)
LOC110494318 rheb coding upstream 128874 62491971 ~ 62496531 (+)
LOC110494314 LOC106565532 coding upstream 134255 62471931 ~ 62491150 (+)
LOC110493234 NA coding upstream 192340 62426544 ~ 62433065 (+)
LOC110494317 LOC106565535 coding upstream 207713 62405413 ~ 62417692 (+)
LOC110493236 LOC106583228 coding downstream 118654 62747771 ~ 62760165 (+)
c1galt1b LOC106565526 coding downstream 134365 62763482 ~ 62774441 (+)
LOC110494322 LOC106565525 coding downstream 178540 62807657 ~ 62812224 (+)
stat2 stat2 coding downstream 197451 62826568 ~ 62839920 (+)
tsfm LOC106565519 coding downstream 327607 62956724 ~ 62958969 (+)
G1473120 NA non-coding upstream 13562 62611137 ~ 62611843 (+)
G1473085 NA non-coding upstream 56947 62568220 ~ 62568458 (+)
G1473083 NA non-coding upstream 59106 62566094 ~ 62566299 (+)
G1473082 NA non-coding upstream 59339 62565749 ~ 62566066 (+)
G1473067 NA non-coding upstream 73162 62551800 ~ 62552243 (+)
G1473143 NA non-coding downstream 21493 62650610 ~ 62650873 (+)
G1473151 NA non-coding downstream 30401 62659518 ~ 62659787 (+)
G1473153 NA non-coding downstream 31863 62660980 ~ 62661211 (+)
G1473121 NA non-coding downstream 34857 62663974 ~ 62667680 (+)
G1473168 NA non-coding downstream 71860 62700977 ~ 62701275 (+)
LOC110494283 LOC106565563 other upstream 1068367 61555873 ~ 61558328 (+)
G1471723 LOC100380707 other upstream 1626342 60972478 ~ 60999063 (+)
G1470607 NA other upstream 2521398 60101892 ~ 60104007 (+)
G1469076 NA other upstream 4117520 58507297 ~ 58507885 (+)
G1467219 NA other upstream 5011105 57589865 ~ 57614300 (+)
G1473171 LOC106581772 other downstream 69386 62698503 ~ 62698815 (+)
G1473177 NA other downstream 81222 62710339 ~ 62711136 (+)
G1474159 NA other downstream 587831 63216948 ~ 63217594 (+)
srsf3b LOC106565658 other downstream 1029327 63658373 ~ 63663255 (+)
tmcc2 LOC106565656 other downstream 1054973 63684043 ~ 63691033 (+)

Expression



Co-expression Network