G1473121


Basic Information

Item Value
gene id G1473121
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 62663974 ~ 62667680 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1684759
ACTCAGAAGCTTCCTTTTGCTATAAACCAGAACATTCTACAAAATGTTGGATGAAATCAACACAGTACCATGCATCAATGGTATCTTTCATCAGACTTTACAATCATGTTTAAAAGAAAATAGAGCTATAATGCAGCAGGTTGTTGTGATTATAGCTGTCAGATTGGAATATTCAGACCAGTGGTTCTAGGCAGAAGCAGGCAGAAAAATGTTTAACCAACATCCTCAGTTGAACAATGGAAATCActgtccaaatcttttcaactaATTTAAGTCAAGAGAGTTGAATTCAATCAAACCCTACATTACGCAGTGTCTTTGTTTACGAAGTACTGCCCCCACACACATGCAGCACACTTCTCATATTGAAAACTGGAAGCATCTGCTTGGGGAGACTATCTGGTATGAGTCACAGACATTACTCATGGAAGAGGAGCTACTGCCCAAATAGGCTACTGCAATCAGAGTTCGACTGAATTGAGATCTCACTGAGTGTTAAACATCCACCTTCAGGGAAGAAAAATCTAAAGCAGACATATCACACAAAATATTATCTGTTAAAATATTCCTCCATTCAAAAAGGACAAAATAAAAAGTTATCTAATCTATTTCTGGCAGTGGTAGTTCATAACAAATGACTGTCCACAGAAATGATTTTGTTTGATTTTAAGAAACAATATTCCCATGCAAGGGGGCCATCTTGTGGTCATGGTACAAAATAACATCATGTGATCCTGCTGTCGGCATGGGCATGGCCACACCACAGATACACCACTTCTACCCTTGGTAGAAGAACTGTCAAAATAAAAGGTTTTGCTGCCTTGATACTTTGGTGTGACTGTGACCATTTCCTTATCATTCATATCATCACACTGTGTGTCATCCTAACATTGTCTCTCCAAACATTTCCTTCTGTGTTATACGCACAGTGTTTCTACTGTACCTTACTGAGTCTCAAAACTCAAACTGTGTCATTCTTACCATTACTCTTTCAATATGTGTTTATTTCCATATAGAATTGAGCACTTTGGCCAAACCAACCCTTCTGTTCaaggcagcatatacagtgccttcagaaagtatttagacattttgttgtgttacagcctgaagttaaaatggctcacacacacacacccaaccccaTAACGTCAAAATGCTGTTGTGTTTGTATAAATTTGTACTaactaattaaaaatgaaaagattaaatgtctggagtcaataagtatttaacccctttgttatagcaagcctaagtaagttcaggagtaaacatttgcttaacaagttacataagtttcatggactctgtgtgccataatagtgttaaacatgatttttgaattattacctcatctctgtgccctaaataaaatgtaaaaaatacattgaatatccttttgagcaagGTGAAGTTAGTAATgagactttggatggtgtatcaatacaaccagtcagtcactacaaagatacaggcgtccttcctaactcagttgccagagaggaaggaaaccgctcagggatttcaccaagaggccaatggtgattttaaaacagttactgaGTTTAATGGCGGGTGATAGGAGAagactgaggatggatcagcaacattgtagttactccacaacactaacccaattgacagagtgaaaagaaggaagcctgaacataattttttttctccaaaacatgcatcctgttcgcaagaaagcactaaagtaatactgcaaaaaatgtgacaaagcacattttgtttttaaaacaatacaacacattactgagtaccactgtccatattttcaagcatagtggtggctgcatcatgttatgggtatgcttgtaatcgttaaggactggggagtttttcaggataaaaaaataaacagaatggggCTAAACACAGGctaaatcctagagaaaaacctggttcagtctactttccactagacactgggagataaattcacctttcagcaggacaataacctaaaagacaacgccaaatctacactggagttgcttaccaagaagacagtgaatgtggccaagttacagttttcacttaaatctacttggaaatctatggcaagacctgaaaattgttgtctagcaatgatcaacaaccaatttgacagagcttgaagtattttgaaaagaataatgggtacATTTTGCACAGTCCaagtgtagaaagctcttagagacatacccagaaaaactcacagctgtaattgctgccaaaggtgcttctacaaactactgactcaggggtgtgaatacttatgtaaatgagatattttctgtatttaattttcaataaattagcaaaaatttaaaaaaaatatattttcactttgtcattatggggtattgtgtgtactgtagatgagtgagaaaaaaatatttaagccattttgaattcaggctgtaaaaaaatgtggaataagtcaaggagtatgaatactttctgaaggcactgtaaaaatGCAATCAATCAATCTCAACTCCCATTAAAAGGCATGCATGGACAGAAGTGTTCCTTTTTATGATGCTTGGAGTAGAAAACAGAGTGGGATAGAACCCAGATAGACATATTGCAGCAGACCAGGAGAAATAGGGATATTGTTCCGAGGTTAGATCCCAGATCAGATGGATGAGCCTCATTCTCCTCAAGCATGGGCCAGTCAGGGGTGACAGTGACACAGAGGGTTCTGGGTAAGGGGCAGTGGTGGAAAACTTTTACTTTTGATCCTTAaaaatattcttaagtatcaaaagtaaaagtataaataatttatgtttagcaaaccagatggcacaattattattatttttttttacggatagccagaagcacactccaacactcagacatcatttacaaactaaggATTTGTGATTCGTGAGTCCGCCAGAtaagaggcagcagggatgaccagggatgttctcttgattaaTGTGTGAATTGGACTATTTTCCTGTACAGCTAAGCATTAAAATGcaagtacttttggttgtcagggaaaatgtatggagtaaaaagtacataattatccttaggaatgtagtgaagtaaaagtaaaagttgtcaaaaatataaacagtaaagtacaaatacccccccccccccaaaaaaaaactacttaagTCTCTACTGACTGTCAATCCCATCCTCAGTCTCCTAAGTCCCCATTTGGCTGACCCATAGAGCTCAGTCCAGCTCAAACTGTGTAGTACAACAGGAATGACAGACTACACACATCTCTGATCTCTTGGCAACAGTATGGAAACTTTTTCACCTCATTAAGTCCTGTAAGCGGCTAATGCTACTTCTTGCTCCTTTTCCTAAATGTCAACCAATTGTGCCATCGATAGGAATTCAGCATCTTTTTGTTCTCTGTCTCTTTAACAAAAGGACTCAGTGGCAAAGCGTCAGATAAGATTTGAGGTACACAACGCACATACACTGCATtaggaaactattcagacccctcga

Function

NR:

description
transposase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1684759 True 3498 lncRNA 0.38 2 62663974 62667680

Neighbor

gene id symbol gene type direction distance location
LOC110494319 LOC106565529 coding upstream 14449 62575985 ~ 62649525 (+)
LOC100136666 LOC100136666 coding upstream 135335 62506856 ~ 62528639 (+)
LOC110494318 rheb coding upstream 167443 62491971 ~ 62496531 (+)
LOC110494314 LOC106565532 coding upstream 172824 62471931 ~ 62491150 (+)
LOC110493234 NA coding upstream 230909 62426544 ~ 62433065 (+)
LOC110493236 LOC106583228 coding downstream 80091 62747771 ~ 62760165 (+)
c1galt1b LOC106565526 coding downstream 95802 62763482 ~ 62774441 (+)
LOC110494322 LOC106565525 coding downstream 139977 62807657 ~ 62812224 (+)
stat2 stat2 coding downstream 158888 62826568 ~ 62839920 (+)
tsfm LOC106565519 coding downstream 289044 62956724 ~ 62958969 (+)
G1473153 NA non-coding upstream 2763 62660980 ~ 62661211 (+)
G1473151 NA non-coding upstream 4187 62659518 ~ 62659787 (+)
G1473143 NA non-coding upstream 13101 62650610 ~ 62650873 (+)
G1473134 NA non-coding upstream 34857 62625405 ~ 62629117 (+)
G1473120 NA non-coding upstream 52131 62611137 ~ 62611843 (+)
G1473168 NA non-coding downstream 33297 62700977 ~ 62701275 (+)
G1473174 NA non-coding downstream 37121 62704801 ~ 62705045 (+)
G1473853 NA non-coding downstream 54718 62722398 ~ 62722636 (+)
G1473860 NA non-coding downstream 58862 62726542 ~ 62727202 (+)
G1473863 NA non-coding downstream 60628 62728308 ~ 62728638 (+)
LOC110494283 LOC106565563 other upstream 1106936 61555873 ~ 61558328 (+)
G1471723 LOC100380707 other upstream 1664911 60972478 ~ 60999063 (+)
G1470607 NA other upstream 2559967 60101892 ~ 60104007 (+)
G1469076 NA other upstream 4156089 58507297 ~ 58507885 (+)
G1467219 NA other upstream 5049674 57589865 ~ 57614300 (+)
G1473171 LOC106581772 other downstream 30823 62698503 ~ 62698815 (+)
G1473177 NA other downstream 42659 62710339 ~ 62711136 (+)
G1474159 NA other downstream 549268 63216948 ~ 63217594 (+)
srsf3b LOC106565658 other downstream 990764 63658373 ~ 63663255 (+)
tmcc2 LOC106565656 other downstream 1016410 63684043 ~ 63691033 (+)

Expression


Co-expression Network