G1473901 (LOC100194703)


Basic Information

Item Value
gene id G1473901
gene name LOC100194703
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 62756010 ~ 62756470 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1685620
gggcaccaccagtacagagcttgctcaggaatggcagcaggcaggtgtgagtgcatctgcacgcacagtgaggcaaaaactttttgaggatggcctggtgtcaagaagggtagcaaagaagccacttctctccaggaaaaacatcagggacagactgatattctgcaaaaggaacagggattggactgctgaggactggggtaaagtcattttctctgataaatcccctttccgattgtttggggcatccggaaaaaagcttgtctggagaagacaaggtgagcgctaccatcagtcctgtgtcatgccaacagtaaagcatcctgagaccattcatgtgtggggttgcttctaagccaagggagtgggctcactcacaacacatcttccgagagcaacttctcccaaccacccaggaacagtttggtgacgaacaatgccttttctagcatgatggagca

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1685620 True 461 lncRNA 0.50 1 62756010 62756470

Neighbor

gene id symbol gene type direction distance location
LOC110494319 LOC106565529 coding upstream 106485 62575985 ~ 62649525 (+)
LOC100136666 LOC100136666 coding upstream 227371 62506856 ~ 62528639 (+)
LOC110494318 rheb coding upstream 259479 62491971 ~ 62496531 (+)
LOC110494314 LOC106565532 coding upstream 264860 62471931 ~ 62491150 (+)
LOC110493234 NA coding upstream 322945 62426544 ~ 62433065 (+)
c1galt1b LOC106565526 coding downstream 7012 62763482 ~ 62774441 (+)
LOC110494322 LOC106565525 coding downstream 51187 62807657 ~ 62812224 (+)
stat2 stat2 coding downstream 70098 62826568 ~ 62839920 (+)
tsfm LOC106565519 coding downstream 200254 62956724 ~ 62958969 (+)
myl6 LOC106565518 coding downstream 203619 62960089 ~ 62968544 (+)
LOC110493236 LOC106583228 non-coding upstream 1033 62747771 ~ 62760165 (+)
G1473885 NA non-coding upstream 11447 62744257 ~ 62744563 (+)
G1473863 NA non-coding upstream 27372 62728308 ~ 62728638 (+)
G1473860 NA non-coding upstream 28808 62726542 ~ 62727202 (+)
G1473853 NA non-coding upstream 33374 62722398 ~ 62722636 (+)
G1473920 NA non-coding downstream 5313 62761783 ~ 62762223 (+)
G1473921 NA non-coding downstream 6339 62762809 ~ 62763078 (+)
G1473927 NA non-coding downstream 14077 62770547 ~ 62770913 (+)
G1473923 NA non-coding downstream 18269 62774739 ~ 62777246 (+)
G1473924 NA non-coding downstream 21426 62777896 ~ 62778280 (+)
G1473177 NA other upstream 44874 62710339 ~ 62711136 (+)
G1473171 LOC106581772 other upstream 57195 62698503 ~ 62698815 (+)
LOC110494283 LOC106565563 other upstream 1198972 61555873 ~ 61558328 (+)
G1471723 LOC100380707 other upstream 1756947 60972478 ~ 60999063 (+)
G1470607 NA other upstream 2652003 60101892 ~ 60104007 (+)
G1474159 NA other downstream 460478 63216948 ~ 63217594 (+)
srsf3b LOC106565658 other downstream 901974 63658373 ~ 63663255 (+)
tmcc2 LOC106565656 other downstream 927620 63684043 ~ 63691033 (+)
G1475820 NA other downstream 1806904 64563374 ~ 64565146 (+)
LOC110494386 LOC106565630 other downstream 1851784 64608194 ~ 64625111 (+)

Expression


Co-expression Network