G1473923


Basic Information

Item Value
gene id G1473923
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 62774739 ~ 62777246 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1685646
TGTATAATGTCACCATTCATTGGGGCGGAGGGTAGCTTAGTGGTTTAAGttttgagccagtaaccgaaaggtcaaatctgtcattctgcccctgaaaaaggcagttaacctactgttccccggtaggctgtcattataaataagaatttgttcttaactgaagaTCACATGGATCAGAGTTAAGTCTGCCTCAAACACCTGCCTTTTACCAAGCCTCTGGATTTCTCTTtctggggggtgtgtgtgttggtacaaGCAACCCAATCCTACAATCTGCTATATAGTTCACATTCCTGTAAAAGGGAACTGTGTGTATAGAACTGTATCTGTTTATGTTGGCAGTGACCATATGGTTATTTGTGTTATAACCATATTTTGCAGTATGTTCTCAAAGGCATAATTTTACTCAGCTGTGTTTCTCTAATCTCATCAGAGAGGCTGATTTTATTGACTGTGTGTGAAATTATATCTCAGACAGAGGTGCTCTAGGGGTTACCAAAGCCTGGTACGGTATATGACCCTTAATCTGGTATAATTTAGCCATGGTTGTAATACATTAGGTAACATATTGTAAAATACAGAAGTAACATTACATTAGTTTGCAATATGTTACATGTATGTTTACAGAATCATTCTCTCGTGGTGGTGAGAAATAAGCAGTGGCATCACGGCAAGACTACGGTTTCTTAGTAAATCCTATTTAGAGGAACTCTGGGTGAATGATGTGAATACAGTCCGGTGTAGTAGACGAAGCAGGACCCTACACACCGGGTGCAAATCTAAGCAGAGAGATGGTATGGAGAACAAAACTGTGGTCAGATCTAGTAAGATGACAGAGCAGCACTAAGCAGTAGCACAACATTTCAGCCAGCACAGGGCTGATAACTGGTACAATCTTGGAGGCTTTCTGTTAGAGAATTAATTTATGAATATTCAATTCACTCCATATTAGACCATAATGGTCTCTAACATGTATGGGTCTCAATCACTAAGATGACTTAAGTGTTGTTTTTGTAATGTTTGGTGTGGTCATTTCATGTAAAAGTCCTACGTGCCTCAGTCTCCCGTTCTTGATGAGAATTCCTCCTCTTGGCTGTGGGTATTCCTCTCCCCAGGGCTGAGGAATGGCTATCACCACGCACAGATCAACAAGATAAACAGGCTTAGTTATGAAACACGTTCCCCAGCGTTCAATAGTCATCTACTTTGGCATTTGGGAATTCCACAAAGTGTCACTGGAGGGCAAACGGTCTCCAGGTTCTGCTTTCCGTCTCTTCCCAGCAACTGCTCTGTGTAGTGTACAGtagctacccactgggcacagacatcagttaaaggtctatttttgatttacatttggtagTCAACTAAcctgaattcaatgtgaaatcaacagaaCAAttcatgtcattggatttagttgggtgaaaaaatattttccttacgttgatgactttaaaaaatccaatcagttttctacCTTGATTCAATTAcattaaatgtttttgttgtttataTGTAAAACTGGGTAAATCAGTGTTTTGCCCAGGGGGTAGTTACTCACCTGACCTGGAGCTCCTGCGACCCAGGAGGCCGAGAAAGACGCCATCCATGTCTGCTACAGAAAAAGAGTTTGGTTCTTTAAAAACATAattgcatacagtggggcaaaaaggtatctagtcagccaccaattgtgcaagttctcccacttaaaaagatgagagaggcctgtaattttcatcataggtacacttcaactatgacggacaaaagtagaaaaatccagaaaatcacgtaggatttttaatgaatttatttgcaaattatgccttttaagtgggagaacttgcacaattggtggccgactaaatacttttttgccccactgtatgtaacatTTTCACCAAAAGGCGTTGCATAAAATTGTACTGTTTGTGGAGGTAGAGCATTTACACCTAGAAATAAGATGATCACATATTACAGTATGTATGTTACCACTGCATAATGCAATATATTAATTCATCTTCAGACGTTTTAGTCACAGACTTGCTGCATTAGATAAACCTACTGTCTAACGcacaaataaaatgtttaaaagtTGATAACATTTCTAGATGGTGGGCACACGGTCATCCATATCATGTATACTGTGGAAGAACCTGCTACCGGTGACAGAATACAAAGGCTCTCTTTGGACCCTGGAGTCCCAGACTCTTACCTGCAGTTCTCCTGCCCATCAGACCCACAAAGGTGTCGTAGTCGCTGTACCTCTTGGAATGAGTTAAATCACCGCTGAGGTAGTCTTGTCTGAACTGGGAGAGCAGATTGTTTATCATTAAATAACTCAAATGATTTAGAATTATTTTGTGAGATTAATATACAGACCAACTACTACATGAACCAGTTCAACTGTGAAGAAAGGGCAAAACCTCAGACTTATCCATAgaaatgtaatatatatacttaacacaaatataaatgcaatatgtaaagtgttggtttcat

Function

NR:

description
PREDICTED: uncharacterized protein LOC106583230 isoform X4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1685646 True 2508 lncRNA 0.39 1 62774739 62777246

Neighbor

gene id symbol gene type direction distance location
c1galt1b LOC106565526 coding upstream 298 62763482 ~ 62774441 (+)
LOC110493236 LOC106583228 coding upstream 14574 62747771 ~ 62760165 (+)
LOC110494319 LOC106565529 coding upstream 125214 62575985 ~ 62649525 (+)
LOC100136666 LOC100136666 coding upstream 246100 62506856 ~ 62528639 (+)
LOC110494318 rheb coding upstream 278208 62491971 ~ 62496531 (+)
LOC110494322 LOC106565525 coding downstream 30411 62807657 ~ 62812224 (+)
stat2 stat2 coding downstream 49322 62826568 ~ 62839920 (+)
tsfm LOC106565519 coding downstream 179478 62956724 ~ 62958969 (+)
myl6 LOC106565518 coding downstream 182843 62960089 ~ 62968544 (+)
pfkmb LOC106565515 coding downstream 327349 63104595 ~ 63121550 (+)
G1473927 NA non-coding upstream 3826 62770547 ~ 62770913 (+)
G1473921 NA non-coding upstream 11661 62762809 ~ 62763078 (+)
G1473920 NA non-coding upstream 12516 62761783 ~ 62762223 (+)
G1473901 LOC100194703 non-coding upstream 18269 62756010 ~ 62756470 (+)
G1473924 NA non-coding downstream 650 62777896 ~ 62778280 (+)
G1473928 NA non-coding downstream 1606 62778852 ~ 62779087 (+)
G1473929 NA non-coding downstream 1882 62779128 ~ 62779440 (+)
G1473931 NA non-coding downstream 3033 62780279 ~ 62780618 (+)
G1473933 NA non-coding downstream 4309 62781555 ~ 62781860 (+)
G1473177 NA other upstream 63603 62710339 ~ 62711136 (+)
G1473171 LOC106581772 other upstream 75924 62698503 ~ 62698815 (+)
LOC110494283 LOC106565563 other upstream 1217701 61555873 ~ 61558328 (+)
G1471723 LOC100380707 other upstream 1775676 60972478 ~ 60999063 (+)
G1470607 NA other upstream 2670732 60101892 ~ 60104007 (+)
G1474159 NA other downstream 439702 63216948 ~ 63217594 (+)
srsf3b LOC106565658 other downstream 881198 63658373 ~ 63663255 (+)
tmcc2 LOC106565656 other downstream 906844 63684043 ~ 63691033 (+)
G1475820 NA other downstream 1786128 64563374 ~ 64565146 (+)
LOC110494386 LOC106565630 other downstream 1831008 64608194 ~ 64625111 (+)

Expression


Co-expression Network