XLOC_033930 (mtch2)


Basic Information

Item Value
gene id XLOC_033930
gene name mtch2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 38667066 ~ 38678090 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00066374
GTAGGTTTCATGCTGGATCTGGCAACACGGTTTTTCGCGTATTACCATCGGCAGTTCTCTGTCAAGGAGGGGGACGTTTCGGATCGTCTTGGTAATGGCGGACACATGTGGCCAAGTCCTCCTTGGGTCTGGATTAACAGTCCTTTCCCACCCGCTTATGTACATCAAGGTTTTAGTTCAGGTCGGACATGAACCTCTCGCTCCCACCCTAGGACGGAATATGTTTGGCCGACAAGTCTACCAACTTCCAGGGCTTTTTGCATATGccaaACACATTATCAAGATTGATGGAAAAGCAGGTCTGTTTAAGGGTCTCGCCCCAAGGCTTTGTGCTGGGACCATTGGCACCATTGTCCACAGTAAAGCCTTGCAGAAGTGCCAGGAGGAAAAAATTGAGGTGTTGGGAAGCAGTCTGAAATCAGACGAAGGGTCTCTGCAACAAGTAATAAATGAGACCACTAAAGAAATGATTGCTCGCTCATGTGCTACAGTTGTCACACACCCTTTTCatgTGATCACGCTCAGATGTATGGTCCAGTTTATTGGCAGAGAAGCCAAATACAGTGGTGTTTTTGACTCCATAGTTACCATATACAGAGAGGAGGGAATCCTGGGATTTTTTGCTGGCCTCATTCCTCGTCTACTGGGAGACGTTCTTTCCCTGTGGATCTGCAACATGCTTGCTCACTtcataaacacatacactatagatGAGTCGACGAGTCATACAGGAGAGATCAAGAACTGCTCTCAGGCTGTGACTGGGTTTTTCGCAAGTATGCTGACGTATCCATTTGTATTGGTGTCCAatatgatggcagtaaataattgTGGGCTGGCTGGAGGTCTGCCACCTTATGCTGCCATTTATCCCAACTGGCTGCACTGCTGGAGTCACCTGAGCCGAGAGGGCAACATGAGTAGAGGCAACAGCCTGTTCTTCAGAAAGCTGCCCGCTGGGAAGACCTATGCCATCGAGCAGAAGAGAtttttttgaatggggaaagCCATGAGCATAGTCTATAattctgataatataattgagCTGGCCCACAATGTTGGACTCCTAACCCTTCTTATGCACTTGTTTAAGATGACAACCGTTTTTTGATAATCAGTTTCCAGCATCAGCCTCCAGGATTATTACTGTTAATTTTATCAGTACATTTTCACTACATTGTTGTTTGCTTTGATTTCGGAacatgaagagctttattttAATACCCAGGGATTTGTATACATGACCAAGGAAAATAAAAACCGCAGTATAACTTCAGCAGAGCACCCGAGGGCGCTCTAGACCATCTGTGCCTGAATCCAGTACAGGCCCCTTACATCtccttttgttttgttgcttggtAATGCTCGTcagtaaaacagtaattattatACATCTGTAGTTGTTTCTACTGGTTCAtgcactgactgactgacaaaaACCTGAAGTTCTCTGCCCTGTTAATAGTAAAAtgatttgtgcgtgtgtgtgtgttaatgtgagagGAAGATTGTGCAGCACCTTGAGCCACTGTATTGTCTATCTGATGTCTGCCAGATGTGTTTTGCGTAAGTCTGCTAAGCTTGACCCCACCCTGGTTGTTTTGATGGATAAGATACTATGTGGCTTCATATCAGTGAGTGATTTAGGACAGTGTGTGGTGTGGTTGTCAACTTCTACACACAATTTTCATCAGAGCTCTGGTCTAGTCAGAATAAAGTTGAGATTTTTATTTCCAATGATGTTATAATTGACCCAAATAAATGTGAGAATGCTT
>TCONS_00066375
CGTCTTGGTAATGGCGGACACATGTGGCCAAGTCCTCCTTGGGTCTGGATTAACAGTCCTTTCCCACCCGCTTATGTACATCAAGGTTTTAGTTCAGGTCGGACATGAACCTCTCGCTCCCACCCTAGGACGGAATATGTTTGGCCGACAAGTCTACCAACTTCCAGGGCTTTTTGCATATGccaaACACATTATCAAGATTGATGGAAAAGCAGGTCTGTTTAAGGGTCTCGCCCCAAGGCTTTGTGCTGGGACCATTGGCACCATTGTCCACAGTAAAGCCTTGCAGAAGTGCCAGGAGGAAAAAATTGAGGTGTTGGGAAGCAGTCTGAAATCAGACGAAGGGTCTCTGCAACAAGTAATAAATGAGACCACTAAAGAAATGATTGCTCGCTCATGTGCTACAGTTGTCACACACCCTTTTCatgTGATCACGCTCAGATGTATGGTCCAGTTTATTGGCAGAGAAGCCAAATACAGGTCAGTggtttaattttaatagttttttattttctttcatatttattaatgtttgtttttgttctgtccAGTGGTGTTTTTGACTCCATAGTTACCATATACAGAGAGGAGGGAATCCTGGGATTTTTTGCTGGCCTCATTCCTCGTCTACTGGGAGACGTTCTTTCCCTGTGGATCTGCAACATGCTTGCTCACTtcataaacacatacactatagatGAGTCGACGAGTCATACAGGAGAGATCAAGAACTGCTCTCAGGCTGTGACTGGGTTTTTCGCAAGTATGCTGACGTATCCATTTGTATTGGTGTCCAatatgatggcagtaaataa

Function

symbol description
mtch2 Acts upstream of or within digestive tract development; fat cell differentiation; and liver development. Predicted to be integral component of membrane. Predicted to be active in membrane and mitochondrion. Is expressed in several structures, including central nervous system; head; liver; male organism; and pleuroperitoneal region. Orthologous to human MTCH2 (mitochondrial carrier 2).

GO:

id name namespace
GO:0045444 fat cell differentiation biological_process
GO:0043065 positive regulation of apoptotic process biological_process
GO:0048565 digestive tract development biological_process
GO:0001889 liver development biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005739 mitochondrion cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-991008-9 Acts upstream of or within digestive tract development; fat cell differentiation; and liver development. Predicted to be integral component of membrane. Predicted to be active in membrane and mitochondrion. Is expressed in several structures, including central nervous system; head; liver; male organism; and pleuroperitoneal region. Orthologous to human MTCH2 (mitochondrial carrier 2).

Ensembl:

ensembl_id ENSDARG00000019732

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00066374 False 1775 mRNA 0.44 13 38667066 38678090
TCONS_00066375 True 815 lncRNA 0.44 10 38667150 38674206
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Neighbor

gene id symbol gene type direction distance location
XLOC_033929 BX957297.3 coding upstream 17537 38649136 ~ 38649529 (+)
XLOC_033928 ndufs3 coding upstream 72464 38588866 ~ 38594602 (+)
XLOC_033927 ptpmt1 coding upstream 84448 38577869 ~ 38582618 (+)
XLOC_033926 nudt19 coding upstream 133370 38529263 ~ 38533696 (+)
XLOC_033925 slc7a9 coding upstream 139233 38507006 ~ 38527833 (+)
XLOC_033931 BX957297.4 coding downstream 328 38678418 ~ 38678532 (+)
XLOC_033932 psmc3 coding downstream 1944 38680034 ~ 38685337 (+)
XLOC_033933 syt13 coding downstream 7564 38685654 ~ 38737718 (+)
XLOC_033934 znf408 coding downstream 66834 38744924 ~ 38750197 (+)
XLOC_033935 f2 coding downstream 72781 38750871 ~ 38760158 (+)
XLOC_033922 NA non-coding upstream 320587 38315655 ~ 38346479 (+)
XLOC_033917 BX323797.2 non-coding upstream 419319 38245927 ~ 38247747 (+)
XLOC_033916 BX323797.1 non-coding upstream 430826 38229070 ~ 38236240 (+)
XLOC_033915 BX323797.4 non-coding upstream 463673 38202538 ~ 38203393 (+)
XLOC_033951 BX908792.2 non-coding downstream 1035125 39713215 ~ 39713774 (+)
XLOC_033960 dre-mir-153a non-coding downstream 1807420 40485510 ~ 40485590 (+)
XLOC_033963 CU041319.1 non-coding downstream 2192541 40870631 ~ 40870748 (+)
XLOC_033965 NA non-coding downstream 2284638 40962728 ~ 41104337 (+)

Expression

Expression of XLOC_033930(mtch2) in the Zebrafish Sample from each Developmental Stage of PRJEB12982

Boxplot with 18 boxes. Box plot charts are typically used to display groups of statistical data. Each data point in the chart can have up to 5 values: minimum, lower quartile, median, upper quartile, and maximum.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 400.
End of interactive chart.

Expression of XLOC_033930(mtch2) in the Zebrafish Sample of PRJEB12982

Bar chart with 360 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 400.
End of interactive chart.

Co-expression Network