G1474024 (smarcc2)


Basic Information

Item Value
gene id G1474024
gene name smarcc2
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 62979400 ~ 62979798 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1685763
TTGAAAAACTCTGGGAGGGCTCTACGCTCGATAGCATGGACACTGTTGTAGTCAAACCAGGCAGCATAGCTGGGGATAATGATGTGGTGGGTCTGCTCGGTCACGTTGTCCTCATGGAGGTCCGAACCTTTCACCGGCTCTCCCTTCACACTCGgagagccctcctcctcctcctttcctgcaGTTTCCATGGATTCATCCTCTTGCTCATCTGTTCAAGAGATAAAATAGGAGAGAGTGAAAATACAGATCAGGGGACAGATAAAGGATGGAGAAAGCTAAAATATTGTAAGAAGTGACCTCATCCTGC

Function

symbol description
smarcc2 Predicted to enable histone binding activity. Predicted to be involved in ATP-dependent chromatin remodeling and positive regulation of transcription, DNA-templated. Predicted to be part of SWI/SNF complex; nBAF complex; and npBAF complex. Orthologous to human SMARCC2 (SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 2).

NR:

description
SWI/SNF complex subunit SMARCC2 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1685763 True 310 lncRNA 0.49 2 62979400 62979798

Neighbor

gene id symbol gene type direction distance location
myl6 LOC106565518 coding upstream 10856 62960089 ~ 62968544 (+)
tsfm LOC106565519 coding upstream 20431 62956724 ~ 62958969 (+)
stat2 stat2 coding upstream 139480 62826568 ~ 62839920 (+)
LOC110494322 LOC106565525 coding upstream 167176 62807657 ~ 62812224 (+)
c1galt1b LOC106565526 coding upstream 204959 62763482 ~ 62774441 (+)
pfkmb LOC106565515 coding downstream 124797 63104595 ~ 63121550 (+)
itgb7 LOC106583060 coding downstream 145090 63124888 ~ 63141041 (+)
espl1 espl1 coding downstream 179265 63159063 ~ 63188421 (+)
pfdn5 pfdn5 coding downstream 208697 63188495 ~ 63194667 (+)
LOC110494337 LOC106565677 coding downstream 216281 63196079 ~ 63201204 (+)
G1474022 NA non-coding upstream 5006 62971531 ~ 62974394 (+)
G1474003 NA non-coding upstream 39519 62937284 ~ 62939881 (+)
G1473992 NA non-coding upstream 59486 62919681 ~ 62919914 (+)
G1473985 NA non-coding upstream 74044 62904892 ~ 62905356 (+)
G1473981 NA non-coding upstream 81853 62897156 ~ 62897547 (+)
G1474026 NA non-coding downstream 1413 62981211 ~ 62982389 (+)
G1474055 NA non-coding downstream 55543 63035341 ~ 63035732 (+)
G1474113 NA non-coding downstream 153965 63133763 ~ 63134241 (+)
LOC110494339 NA non-coding downstream 239728 63219189 ~ 63226560 (+)
G1473177 NA other upstream 268264 62710339 ~ 62711136 (+)
G1473171 LOC106581772 other upstream 280585 62698503 ~ 62698815 (+)
LOC110494283 LOC106565563 other upstream 1422362 61555873 ~ 61558328 (+)
G1471723 LOC100380707 other upstream 1980337 60972478 ~ 60999063 (+)
G1470607 NA other upstream 2875393 60101892 ~ 60104007 (+)
G1474159 NA other downstream 237150 63216948 ~ 63217594 (+)
srsf3b LOC106565658 other downstream 678646 63658373 ~ 63663255 (+)
tmcc2 LOC106565656 other downstream 704292 63684043 ~ 63691033 (+)
G1475820 NA other downstream 1583576 64563374 ~ 64565146 (+)
LOC110494386 LOC106565630 other downstream 1628456 64608194 ~ 64625111 (+)

Expression


Co-expression Network