G1474827


Basic Information

Item Value
gene id G1474827
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 63691804 ~ 63694554 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1686674
ttttttaatcaTTGTCAGGCAAACCCCATatgacaattacattgatgacaGGTGCTTTTACAATACAGAAGAGATCATGACAGGCCAATGGAAAGGCCATACCTGACCTTAAAAAGTAAGACATTCATCGTCATTAGATTATTCCAACTTTACAGTTCACATAAATGAAttttgtacactgaacaaaaatataaacgaaacatgtaaagtgttggtcccatgtttcatgagcggaaataaaagatcccagaactgttccatacacacaaaagcatatttctctcaaattctgtgcacaaattggtttacatccctgttagggagcatttctcctttgccaagataatccattcacctgacaggggtggcatatcaataagctgattaaacagcatgatcatcacacaggtgaaccttgtgctcgggacaataaaaggccactaaaatgtgccgttttgtcacaacacaaagcTACAGATGTCTCACGTTGAGgcagcatgcaattggcatgttgactatAGGAAAGtagatgaaactgtgggtttgcacaaccaaagaatttctgcacaaactgtcagaaaccgtctcagggaagctcatctgcatgtaCACcatggtcttgacctgactgcagttcagcgtcgtaACCGACCAGTGGGCAAAGCAAATGATaatcttcacagatgaatcccagtttcaactgtactgggcagatggcagacagtgtgtatggcgttgtgtgggtgagcggtttgctgatttcaacgttgtgaacagagtggcggtggggttatggtatgggcaggcataagctaggacaacgaacacaattgcattttatcgatggcaatttaaaAATGCAGAGATACTGTGCCGAGATCCTGcggtccattgtcgtgccattcagtTGCCGCCATCACCtaatgtttcagtatgataatgcacggccccatgttgcaaggatctgcacagaattcctggaagctgaaaatgtcacagttctttcatggcctgcttacgcaccagacatgtcacccattgagcatgtttgggatgctctgaagtgtacgacagcgtgttcagGTTCCcgacaacgatccacacccctatttaaaaaaaaaaatagaaggtatctgtgaccacccgatgcatatctgtattctcagtcatgtgaaatccatagattaggggcaAATTAATTCATTTATATATACtctaactcagtcaaatctttaaaattgttgcatgttgcgtttatatttttgttcagtgtatttgatTCATATCAAGACCAGCAGTACAATAACTCTTGAGAACCTGGCAAATTAAGACCCCAAATAGAAACAGCAGAGTAGAAAAAAACTACGTATTACAAAGCTGAAGAATTCCTGATTTTATCTTGATTTCATGTCATGATGTCACACATATATTGCTTGCAGGTGCTCCACTCCAGTGAAATGGATACCCCTCTTAACCCAAACAATTATCCCAACAACACACTCTCCAATATCTCAGTCCTTTGTTCATTCTTCCATCCATTTCTAACCATGAACAGAGTTACAGTGCACCGGACTCCAACCAGAGCCTAAACTAGCCTCTACAATTAaggtaggaggagaagagagctgCCACATGACATAGAAGTCAATAAAAGATCAGAAGGAGCCCATTGATCATGGGATCAACGACCTAAGCCCCTCCTCCATAAAGGTGCAGCATGACGCCAGTTGGCTCAATACAATTCCCATCCATATCCAAAGTAGCTTTCTGCCACACAACTCCATACCTCTGTTCAAGGTAGGGAAACGGAGTAGATACAGGAATATCTACACACCATCTATACCGTTCATTCTGTTGGCCCAGACCAAGGCCTTACAGCCTGAGATATCCACAGCAGAACGTGTCAGAACGAGAGAGGTCATTGTGAGATACAGATGACACTGGGTTGGAGACTAAAATGCCCTTGGCTGACATCTCATTGTGGTTGAGAATACAGAACAGAGGTAGGCTAGGCAACATTGGTTATGGAGTGTCTGATAGTATCTGCAGGCTTGCCGTAATCCACCCAGGCTGTGAATCACCTGATGCAATTAATAATCTCTGATCCTGAGCCACAAAGGGAAACTCAATTAGTTTAGCCACGGAAGAATTCCTATTCCGTTCCAAATGGCTGGTGTTCATCATCCCAGGAGGGAGATAAACATTGGTGGAGGATGAGGCAAGTTAACTCCTATACAATGTAAAGCACTTTGACACCTGGTGAAATATATAACTAACCGTGATCAACATTGCCTTCAGTAGCTCTCACATGGCTGTTAGCACAAACAAATGTGGGCTGAGTTGTTTCAAGCCAAGGGAAATCTAGGTGTAAACCAGGATGTAGCCTGGTAGAGGAAGTGTAACATGCCCAGGCAGACCTCTAGGCAACAGACACAGATATAGGTCTCAGTCCCCCAGACCAGGTAGACATCAGTCAGGTAGTACACCCTGGTCTAgggtgtaggagggagaggggcctAGGCAGACCTCTGGGTATAGAACAAAATGTAGGCCTGAGTGttgcacacctcctccacactgcaCACGTTCATCTCAGAGTCATTACAGTGGAC

Function

NR:

description
Transposable element Tcb2 transposase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1686674 True 2612 lncRNA 0.44 2 63691804 63694554

Neighbor

gene id symbol gene type direction distance location
tmcc2 LOC106565656 coding upstream 771 63684043 ~ 63691033 (+)
cdkn1a LOC106565657 coding upstream 20370 63665848 ~ 63671434 (+)
srsf3b LOC106565658 coding upstream 28549 63658373 ~ 63663255 (+)
LOC118940486 NA coding upstream 111215 63574560 ~ 63580589 (+)
LOC110494349 LOC106565665 coding upstream 148323 63516736 ~ 63543481 (+)
bysl bysl coding downstream 7524 63702078 ~ 63705600 (+)
dstyk LOC106565654 coding downstream 45808 63740362 ~ 63779877 (+)
LOC110494364 LOC106565650 coding downstream 183685 63878239 ~ 63883527 (+)
nbl1 nbl1 coding downstream 198444 63892998 ~ 63903875 (+)
LOC110494366 LOC106565648 coding downstream 214486 63909040 ~ 63919556 (+)
G1474819 NA non-coding upstream 13656 63677762 ~ 63678148 (+)
G1474813 NA non-coding upstream 18376 63672900 ~ 63673428 (+)
G1474814 NA non-coding upstream 24104 63667475 ~ 63667700 (+)
G1474803 NA non-coding upstream 40512 63651034 ~ 63651292 (+)
G1474833 NA non-coding downstream 14338 63708892 ~ 63709124 (+)
G1474835 NA non-coding downstream 15142 63709696 ~ 63709960 (+)
G1474846 NA non-coding downstream 31067 63725621 ~ 63725839 (+)
G1474849 NA non-coding downstream 35126 63729680 ~ 63729913 (+)
G1474852 NA non-coding downstream 38331 63732885 ~ 63733103 (+)
G1474159 NA other upstream 474210 63216948 ~ 63217594 (+)
G1473177 NA other upstream 980668 62710339 ~ 62711136 (+)
G1473171 LOC106581772 other upstream 992989 62698503 ~ 62698815 (+)
G1475820 NA other downstream 868820 64563374 ~ 64565146 (+)
LOC110494386 LOC106565630 other downstream 913700 64608194 ~ 64625111 (+)
LOC110494389 NA other downstream 1060767 64755321 ~ 64780475 (+)
G1476510 NA other downstream 1608863 65303417 ~ 65304128 (+)
G1476520 NA other downstream 1631323 65325877 ~ 65327163 (+)

Expression


Co-expression Network