XLOC_003394


Basic Information

Item Value
gene id XLOC_003394
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 18741027 ~ 18742103 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00008585
CCCTAAACGCACAATGACGCTGCCACTGTATTCATGTCAACTGGTGCTACACAAATTAGCACATACTTATCTGAGGTGATACGTCTTATTTTAATGCAAAACAGCTATTTCCTTATTCGCTGTATGCTAAGCAGACTCTCAATGTTTTCCGCATATGTTCTGACATAAACTTTAAAGACTTTTTTATGAACCTGAAGGGAGTGTAAAAGACTCAGAGGTTTTAAGACATTGTAAATATGCACCAGGCCATGTCTTCAGCTTAATTGgttctcaaatatatatataaatagaaatataacACTAATACAAGCAGAGGTGTGGCCACAATATCTGCAAAACATGCATATTTTTGAGCTAACATGATGGTTTTGAACTGTTACACATCTTTTCTTCAGTGGAGATATGAGTATTGTATCTgtggcttaatttttttttacaaatgtatattttttattcttaaaaaacaTCCTAAGTGTAGTCACTATATATGGAAAACATGCATATTTTTGTATGCTAACATGATAGATTTGCACTGTTACACATCTGTTCTTCACTGGAGAAAAAGGCACCATATATTTTGCTCTAATTTgttcacaaatgtgttaatttttatTACTGTTGTGTTGTTACTGGCACAATAAACTAGATAAATACTTCAAAGACAAGCAGAACTTCGTAAGTGTGTGCACAATACCTGGAAAGCATGCATATTTTTGTATGCTAGCAATGTTTTTGAACTGCTACATATCTCTCTACTGGAGAGACTagaattattttacaaatgtcaTTTTTCTGTCATTGTTGTATTGTTACTGGGacattaaactaataaaattataTGTATAACACTAATACCAGCAGAACTTCTCAAGTGTGGCCACAATACCT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00008585 True 888 lncRNA 0.33 2 18741027 18742103

Neighbor

gene id symbol gene type direction distance location
XLOC_003393 NA coding upstream 32968 18702362 ~ 18708059 (+)
XLOC_003391 ncoa3 coding upstream 41458 18612166 ~ 18699569 (+)
XLOC_003392 BX296530.1 coding upstream 64470 18676442 ~ 18676557 (+)
XLOC_003390 tmcc1b coding upstream 496466 18205766 ~ 18244561 (+)
XLOC_003389 LO018315.6 coding upstream 540326 18183220 ~ 18200701 (+)
XLOC_003395 CU207354.2 coding downstream 90810 18832913 ~ 18833246 (+)
XLOC_003396 magi1b coding downstream 131010 18873113 ~ 19091767 (+)
XLOC_003397 adamts9 coding downstream 415776 19157879 ~ 19227802 (+)
XLOC_003398 prickle2b coding downstream 529454 19271557 ~ 19471758 (+)
XLOC_003399 psmd6 coding downstream 760194 19502297 ~ 19511548 (+)
XLOC_003369 CR854846.2 misc upstream 2617945 16122786 ~ 16123082 (+)
XLOC_003318 CR450764.6 misc upstream 6029031 12711700 ~ 12711996 (+)
XLOC_003317 CR450764.16 misc upstream 6046764 12693967 ~ 12694263 (+)
XLOC_003316 CR450764.11 misc upstream 6055428 12685304 ~ 12685599 (+)
XLOC_003315 CR450764.18 misc upstream 6060999 12679732 ~ 12680028 (+)
XLOC_003381 NA non-coding upstream 777574 17956841 ~ 17963453 (+)
XLOC_003380 NA non-coding upstream 788469 17951563 ~ 17952558 (+)
XLOC_003379 NA non-coding upstream 808869 17930273 ~ 17932158 (+)
XLOC_003402 BX276115.1 non-coding downstream 1290963 20033066 ~ 20033185 (+)
XLOC_003405 NA non-coding downstream 2146007 20888110 ~ 20890881 (+)
XLOC_003407 NA non-coding downstream 2186138 20928241 ~ 20930324 (+)
XLOC_003409 CU459075.1 non-coding downstream 2310125 21052228 ~ 21052344 (+)

Expression


Co-expression Network