G1476140 (LOC106565622)


Basic Information

Item Value
gene id G1476140
gene name LOC106565622
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 64914503 ~ 64918526 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1688200
GGGTGGAAATTCACCTTGGTAACCTCAGTCAGTATGGTAAGTCATTATTGGACTGCACTCATGTGGGGATATAGGAGCACGTGATTGCAGCTGAACACACAGAAAAGATAAACAACCAAATTTATTATTTTCCAAAAAACAAAACCACAACTTAGAAAACATACAGAAAAGGTACACCTTTAAATTACACAGGCTCTTATAaacaaaataaaatctatctataTTTACAACAGCAGGGGTGACAACAGGTGACAGTTCTCTTCTGGGTTTCTGTCATAATTAGATAAACATGTTTCTCTGATACAGTCTCTATACAGTGCCATCCCCTTGGCTCTGGGTTGAAGTTAAGGACAACATTATAGGCAAAGATGTAAAACTGACCATAGATCAGTGGCCACTTCATCCTGCTCACCAAGCAAGGCTCACCAAATGCTTTACAACAGTGTAACAGCAACTAACCACAGGCCTGCCTCAGTTAACAATACGATTACACCACAAATCTGAACTCTTCTGTCCAGTACATTGTGATGAAGGCTGTATCCCAACAGTCAAATGGATTCCTATTCTGTTTTTCtcctccatctacactgatttgaaaacCTTCATTTCACCTGTCCAGTTCTTTCAGGTCAGCGCAGATGGAGACAAAGCGACATTAAGACTATTGAGATGGAGCACTGTTGTGTCAAGGCAAACTGCAGTACATGGACAGAGCAACAGCTGGGGTCAAGACAAACTGCAGTACATGGACAGAGCAACAGCTGTGCTCAAAGACAAACTGCAGTACATGGACAGAGCAACAGTGGGGTCAAGACAAGAGGCCAGGGTGTCAGAATACACAGACAAAGGGTTCAGGCCAACCTTTGCGTTCAATACCCACACGCACACTCAAAGAAACACACATTTTACAGAACATTTGTATAACATTCTGTGACAAGTACATTGTAAACCCGCGTTCAAAATAAATTGATTGAAAGACATTATGCACACATCACATACAGCTTGTACACAactagagaacagagaaggaTGAGATCAATCTAGAATAAGGGCTTGGAGGGAGATTCCTTAGACATTCCTCCTCATTACACTAGATGTCACTGCTGATCAACTACTATCGCAAGTGCAAAAACTGAAACACTGGGTGCACGCTGATAGTCTAAAGTGGCTTCCTTTACTCCACCTGCACCGATGTGAAAGAACTTGACAAGTGAAAAACTCTCGCACAAGGAATCCCCCATAATGCCTTGTCCTGTTTTGTTGTCAGTGCATATGAAGGAGAGGATATAAGGAGACAAGTTTATACTTTAGACTACTTTGGTGCAGCCTGAGTCTGTTTGGAAAGGAGATGAGGGTTCAGTGAAAGTGCATTCTGACAGAGTGCATCTCATTACCTATGCTATTAATGGGGGTTATTCAACCTCTATCACCACAGACTAGGTCATCTGTAAATATTggtaataaaaaatgttttaaaaaatcttACTTTCTAGCGATCGGGATATTTCATGGTGCTGTGCCCATCCCAAACAGCAGAGGGCAGCACTCTCCGTCAGAATCCAAATCAGATCAGATTACATGTCGTTAGGGAGAGATCAGATGTTTCATACCCTGGCCCTAATATTTTTAAGGATATGGTCTAGAAATAATAGATGTGTGTTTAGGGGAAACATCATTGGTGACAGTAGTCTAATCCAGTGTACCTCAACTCATTCCACATTGTGAATGTACCTTTATTACGAGCAACATGGACAGACCAATCTATGATTCATGACCAATGATATTTTAGATTCAGCTGTCAGACACCTTTAACGTCGTAACAAACAACTGTCTCCTACTAACCCTAACATGTCATGGGCTCTGCTGACATGGTCATATCACATGGCTAAGATATAACCGTTGAACTCTGACACACTTGATGTGGACCAAGATCcccttcatcacacacacacacaccttttcattcagttgtctacacacacacactcctttctctctgtccctccctccctctcagtcaGTCAATGAGAACTAGCTCTCCCTTACTCCTTTATCCCTATTAAaaactctcccttcctctctccctcccactcagtCAGTGAGGAGAACTAGCTCTCCCTTACTCCTTTATCCCTATTAAaaactctccctctctctctcccttccactcagtcagtcagtgaggagAACTAGCTCTCCCTTACTCCTTTATCCCTATTaaaaactctctccctctctctctccctcccttccactcagtcagtcagtgaggagAACTAGCTCTCCCTTACTCCTTTATCCCTATTAAaaactctcccttcctctctccctcccactcagtCAGTGAGGAGAACTAGCTCTCCCTTACTCCTTTATCCCTATtaaaatctctccctctctctctccctcccactcagtcagtcagtgaggagAACTagctctccctcactcctctctcctctgtcactctCCTCCCCCTCGCTGTACggtggtctctccctctctctgtggagGGGAGTGGGTGTGATCTGCCCGTCAATTCTGCGAGGAGGCGGAGCCTCCAACCCTCGTGGCAGGTAGTGCTCCAATAGCGCGGGGTGGAATGGCACCGTCGGCATGGAGACCGTTCCACCGCCGCCTGGGTATTGGCCCTCGCCTGGGGCGTAGTGCAGCTTCTGTGGCTCTGATTGactggaagacagacagagacgggacGTTGGTGCTGGAATGTACAACAATTCCCAAATCCTTGTCTAAATCTGAAAGGACTGGATAGGTGTTTGCCCTGAGGCATGGTTGTATGTAGGAGTCTACCACCATGTCTCAGGACATGTTCATACCCAGAGAAGAGGACTGGACTGAAGAGAACAAACCCCTCGAAGCTGCTGTTACTCAAGAGCAGTTTTACAGTCATAGTGAATAAAACTCTGCTCTATTGTTGTCTATGAGAGAAGACATAACCAGCTGTAGGCCTGCATTTCTATTTAACCACAGTGGGTTTGTTTGTGTTCTTACAGAAAAAGCACGAGGGACTAGAGCAGAGTTTGTTTCGCTAAGAGCTCTCTGCATAATATCAACTCAGGTTCTCTTCACTATCAGAGCCAATCTCTAACAGATCATCAtctccagtgtgtgttacctgtgtgtgtatgcccctctctgctcctgtctcCTGCTCTTCATCATGGCTTTGTACTCGCCCACCCTGAGTCTCCGCCCCTCCACGATGCAGGTGCGTTTGGGGCGGGGCTTGTATTTGTAGTCGGGGTAACGCTCCAGGTGCTGTCGGCTCAGCCTGGCCTGCTCCTCATAGTAGGGCTGCTTCTCCTGGTTAGACATAGACTTCCATCTAGTtcctggagggaaggagggacacagacaaaacagagagagagacaatgtcaGACTAAAGAACAGAGGACTTTCTGTACAAGAATACATGGGCTTTTCCTAGTTAGGAAAGGGGGGGAGGGGCAGCATTGGAGACGGGGATGcattggagtgggtcgagagcttcaagttcctc

Function

NR:

description
PREDICTED: transcription factor SOX-13-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1688200 True 3526 lncRNA 0.46 2 64914503 64918526

Neighbor

gene id symbol gene type direction distance location
LOC110494394 LOC106565623 coding upstream 309 64896863 ~ 64914194 (+)
LOC110494391 LOC106565625 coding upstream 33352 64846968 ~ 64881151 (+)
LOC110494390 klhdc8a coding upstream 91423 64802910 ~ 64823080 (+)
LOC110494389 NA coding upstream 139774 64755321 ~ 64780475 (+)
LOC110494386 LOC106565630 coding upstream 289392 64608194 ~ 64625111 (+)
LOC110494396 LOC106565619 coding downstream 78056 64996582 ~ 65014790 (+)
LOC118940493 NA coding downstream 534826 65453352 ~ 65454830 (+)
LOC118940487 oncmyk-dab coding downstream 605173 65523697 ~ 65552657 (+)
LOC110494410 LOC106565693 coding downstream 653841 65572367 ~ 65578944 (+)
LOC110516128 LOC106565694 coding downstream 661730 65580256 ~ 65649976 (+)
G1476083 NA non-coding upstream 74367 64819966 ~ 64840136 (+)
G1476059 NA non-coding upstream 128890 64785412 ~ 64785613 (+)
G1476020 NA non-coding upstream 184370 64729894 ~ 64730133 (+)
G1476178 NA non-coding downstream 5896 64924422 ~ 64924784 (+)
G1476189 NA non-coding downstream 23926 64942452 ~ 64942751 (+)
G1476220 NA non-coding downstream 90980 65009506 ~ 65010057 (+)
G1476227 NA non-coding downstream 110864 65029390 ~ 65029637 (+)
G1476330 NA non-coding downstream 122740 65041266 ~ 65041535 (+)
G1475820 NA other upstream 349357 64563374 ~ 64565146 (+)
tmcc2 LOC106565656 other upstream 1226413 63684043 ~ 63691033 (+)
srsf3b LOC106565658 other upstream 1251249 63658373 ~ 63663255 (+)
G1476510 NA other downstream 384891 65303417 ~ 65304128 (+)
G1476520 NA other downstream 407351 65325877 ~ 65327163 (+)
G1476569 NA other downstream 499565 65418091 ~ 65466767 (+)
G1476898 NA other downstream 863253 65781779 ~ 65783335 (+)
G1477313 NA other downstream 1370346 66288872 ~ 66290448 (+)

Expression


Co-expression Network