G1476568


Basic Information

Item Value
gene id G1476568
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 65441015 ~ 65500519 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1688708
acagagagacagaaacagagagacagagagacagaaacagagagacagaaacagagagacagagagacagaaacagagagacagaaacggagagacagaaacagagagacagaaacagagagacagagagacagaaagacagagagacagaaacagagagacagagagacagaaatagagagacagaaacagagagacagagagacagaaacagagagaaagaaacagggagacagaaacagaaacagagagagagagagacagaaacagagagaaagaaacagggagacagaaacagagacagagagacagagagacagaaacagagagacagaaacagggagacagaaacagagagacagagagacagatacagagagacagaaacagagagacagagagacagagatacagaaaaagagagacagagagacagaaacagagagacagagcgacaaagagagagacagaaacagagagacagaaacagagagacagaaacagagagacagagagacagaaacagagagacagaaacagagagacagatagacagaaagacagagagacagaaacagagagacagagagacagaaatagagagacagaaacagagagacagagagacagaaacagagagaaagaaacagggagacagaaacagagacagagagacagagagacagaaacagagagacagaaacagggagacagaaacagagagacagagagacagatacagagagacagaaacagagagacagagagacagagatacagaaaaagagagacagagagacagaaacagagagacagagagacgaagagagagacagaaacagagacagaaacagagcgacagagagacagaaacagagagacagaaacagagagacagagagacagagacacagaaacagagagacagaaacagagagacagaaacagagagacagagagacaattagacccaaccaaatcattagaaaacaaaaagataattacttgacac
>TU1688714
acagagagacagaaacagagagacagagagacagaaacagagagacagaaacagagagacagagagacagaaacagagagacagaaacggagagacagaaacagagagacagaaacagagagacagagagacagaaagacagagagacagaaacagagagacagagagacagaaatagagagacagaaacagagagacagagagacagaaacagagagaaagaaacagggagacagaaacagagacagagagacagagagacagaaacagagagacagaaacagggagacagaaacagagagacagagagacagatacagagagacagaaacagagagacagagagacagagatacagaaaaagagagacagagagacagaaacagagagacagagagacaaagagagagacagaaacagagagacagaaacagagagacagaaacagagagacagaaacagagagacagaaacagagagacagagagacagaaacagacagacagagagacagaaacagagagacagaaacagagagacagagagacagagagacaaaaacagagagacagaaacagagagacagaaacagagagacagagagacagagagacaaaaacagagagacagaaacagagcgacagagagacagaaagagagagacagaaacagagcgacagagagacagaaacagagagacagaaacagagagacagagagacagagacacagaaacagagagacagaaacagagagacagaaacagagagacagagagacaattagaccc
>TU1688717
agagagacagaaacagagagacagagacagagagacagaaacagagagacagaaacagagagacagaaacagagagacagaaacagagagacagatagacaaagagagagacagaaacagagacagaaacagagcgacagagagacagaaacagagagacagaaacagagagacagagagacagagacacagaaacagagagacagaaacagagagacagaaacagagagacagagagacaattagaccc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1688708 False 1012 lncRNA 0.44 3 65441015 65500519
TU1688714 False 790 lncRNA 0.44 3 65441015 65476017
TU1688717 True 250 lncRNA 0.44 3 65443286 65476017

Neighbor

gene id symbol gene type direction distance location
LOC110494396 LOC106565619 coding upstream 426225 64996582 ~ 65014790 (+)
LOC110494394 LOC106565623 coding upstream 526821 64896863 ~ 64914194 (+)
LOC110494391 LOC106565625 coding upstream 559864 64846968 ~ 64881151 (+)
LOC110494390 klhdc8a coding upstream 617935 64802910 ~ 64823080 (+)
LOC110494389 NA coding upstream 666286 64755321 ~ 64780475 (+)
LOC118940487 oncmyk-dab coding downstream 23180 65523697 ~ 65552657 (+)
LOC110494410 LOC106565693 coding downstream 71848 65572367 ~ 65578944 (+)
LOC110516128 LOC106565694 coding downstream 79737 65580256 ~ 65649976 (+)
LOC110494417 LOC106565918 coding downstream 890877 66391396 ~ 66401187 (+)
pax7a pax7a coding downstream 964936 66465455 ~ 66527607 (+)
G1476551 NA non-coding upstream 38380 65395711 ~ 65402635 (+)
G1476550 NA non-coding upstream 40409 65393264 ~ 65400606 (+)
G1476531 NA non-coding upstream 86507 65354250 ~ 65354508 (+)
G1476477 NA non-coding upstream 143355 65251334 ~ 65297660 (+)
G1476476 NA non-coding upstream 167499 65248636 ~ 65273516 (+)
G1476460 NA non-coding downstream 34201 65534720 ~ 65537951 (+)
G1476599 NA non-coding downstream 39922 65540441 ~ 65541412 (+)
G1476471 NA non-coding downstream 117148 65617667 ~ 65620002 (+)
G1476642 NA non-coding downstream 153819 65654338 ~ 65654572 (+)
G1476520 NA other upstream 113852 65325877 ~ 65327163 (+)
G1476510 NA other upstream 136887 65303417 ~ 65304128 (+)
LOC110494386 LOC106565630 other upstream 818846 64608194 ~ 64625111 (+)
G1475820 NA other upstream 875869 64563374 ~ 64565146 (+)
G1476898 NA other downstream 281260 65781779 ~ 65783335 (+)
G1477313 NA other downstream 788353 66288872 ~ 66290448 (+)
G1477578 LOC100194703 other downstream 1056518 66557037 ~ 66557512 (+)
kcnab2a kcnab2 other downstream 1178741 66566779 ~ 66780792 (+)
G1477697 NA other downstream 1216854 66717373 ~ 66718688 (+)

Expression

G1476568 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 60.
End of interactive chart.

G1476568 Expression in each Bioproject

Bar chart with 14 bars.
G1476568 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 1000.
End of interactive chart.

Co-expression Network