XLOC_003395 (CU207354.2)


Basic Information

Item Value
gene id XLOC_003395
gene name CU207354.2
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 18832913 ~ 18833246 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00006647
tttttttttatttatttattttattttttgtttttatatatatattttattattattttattttctactgcTGTACCCTttgagtatttgtatttatttattctcggcactgttgttgttgttgttgttgttgtttttttttctgtttttttttttttgttttttttcccttaatgCATGAATATGTAACTATATTTtattcagagagaaagaaaacgtgagcaaaattGTATTCTACCACCACATTGGATCAGTTGATGTCTAATGATTCTGTGTATCTGATGCTGTGGCTCTCTGACtaacatatttcaataaaaacaGAGTTAAACTAAAA

Function

GO:

id name namespace
GO:0048731 system development biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:0007275 multicellular organism development biological_process
GO:0006412 translation biological_process
GO:0048856 anatomical structure development biological_process
GO:0042255 ribosome assembly biological_process
GO:0006518 peptide metabolic process biological_process
GO:0032501 multicellular organismal process biological_process
GO:0044391 ribosomal subunit cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0022625 cytosolic large ribosomal subunit cellular_component
GO:0022626 cytosolic ribosome cellular_component
GO:0022627 cytosolic small ribosomal subunit cellular_component
GO:0044445 obsolete cytosolic part cellular_component
GO:0005840 ribosome cellular_component
GO:0015934 large ribosomal subunit cellular_component
GO:0005198 structural molecule activity molecular_function
GO:0003735 structural constituent of ribosome molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000098068

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00006647 True 334 lncRNA 0.25 1 18832913 18833246

Neighbor

gene id symbol gene type direction distance location
XLOC_003394 NA coding upstream 90810 18741027 ~ 18742103 (+)
XLOC_003393 NA coding upstream 124854 18702362 ~ 18708059 (+)
XLOC_003391 ncoa3 coding upstream 133344 18612166 ~ 18699569 (+)
XLOC_003392 BX296530.1 coding upstream 156356 18676442 ~ 18676557 (+)
XLOC_003390 tmcc1b coding upstream 588352 18205766 ~ 18244561 (+)
XLOC_003396 magi1b coding downstream 39867 18873113 ~ 19091767 (+)
XLOC_003397 adamts9 coding downstream 324633 19157879 ~ 19227802 (+)
XLOC_003398 prickle2b coding downstream 438311 19271557 ~ 19471758 (+)
XLOC_003399 psmd6 coding downstream 669051 19502297 ~ 19511548 (+)
XLOC_003400 thoc7 coding downstream 770005 19603251 ~ 19611356 (+)
XLOC_003369 CR854846.2 misc upstream 2709831 16122786 ~ 16123082 (+)
XLOC_003318 CR450764.6 misc upstream 6120917 12711700 ~ 12711996 (+)
XLOC_003317 CR450764.16 misc upstream 6138650 12693967 ~ 12694263 (+)
XLOC_003316 CR450764.11 misc upstream 6147314 12685304 ~ 12685599 (+)
XLOC_003315 CR450764.18 misc upstream 6152885 12679732 ~ 12680028 (+)
XLOC_003381 NA non-coding upstream 869460 17956841 ~ 17963453 (+)
XLOC_003380 NA non-coding upstream 880355 17951563 ~ 17952558 (+)
XLOC_003402 BX276115.1 non-coding downstream 1199820 20033066 ~ 20033185 (+)
XLOC_003405 NA non-coding downstream 2054864 20888110 ~ 20890881 (+)
XLOC_003407 NA non-coding downstream 2094995 20928241 ~ 20930324 (+)
XLOC_003409 CU459075.1 non-coding downstream 2218982 21052228 ~ 21052344 (+)
XLOC_003413 BX321912.1 non-coding downstream 2352223 21185469 ~ 21186684 (+)

Expression


Co-expression Network