XLOC_033951 (BX908792.2)


Basic Information

Item Value
gene id XLOC_033951
gene name BX908792.2
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 39713215 ~ 39713774 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00066462
AAACAAAATACTTTGTGCATCAGGACAGTTCACTATGACTTCCCAACAAGGTTTTTTAGTATTATCCTGTTGATATCAGAGCTATCTCGCTGAATCTGCAGCTATGCGTCATTATCgtgcttgtgtttttctttttctttttgttcaacTACAGGAAACCatTCCACTGGAACTGATTGCTGTTataattttttcaaaagaaaaatcccCCTGAGTAAAATTAATTCCTACAGTCTGACAAGAGTGGACTGCACTATGCCTGGAGTAATGAAGGAAAGATGCAAATGATTGCAATAAACTTTAGTTGT
>TCONS_00066463
TGATTGCTGTTataattttttcaaaagaaaaatcccCCTGAGTAAAATTAATTCCTACAGTCTGACAAGAGTGGACTGCACTATGCCTGGAGTATTTGTCACACAGAAGGGTTTGCGGCTCTGTGTGGAACCTAAGCTGAACTGGGTCAAGAAAACCATCCAAATCATTG

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000105550

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00066462 False 308 processed_transcript 0.36 2 39713215 39713623
TCONS_00066463 True 170 transcribed_unprocessed_pseudogene 0.41 2 39713489 39713774
Loading

Neighbor

gene id symbol gene type direction distance location
XLOC_033950 ccl36.1 coding upstream 6054 39706004 ~ 39707161 (+)
XLOC_033949 tbc1d14 coding upstream 7452 39679944 ~ 39705763 (+)
XLOC_033948 zgc:158564 coding upstream 34685 39664055 ~ 39678530 (+)
XLOC_033947 ptpn5 coding upstream 52053 39624728 ~ 39661162 (+)
XLOC_033946 tnnt3b coding upstream 252852 39444843 ~ 39460363 (+)
XLOC_033952 si:dkey-58i8.5 coding downstream 6543 39720317 ~ 39722716 (+)
XLOC_033953 tada2b coding downstream 24731 39738505 ~ 39743452 (+)
XLOC_033954 sorcs2 coding downstream 43834 39757608 ~ 40057772 (+)
XLOC_033955 MAF1 coding downstream 367856 40081630 ~ 40092016 (+)
XLOC_033956 si:ch73-174h16.4 coding downstream 379888 40093662 ~ 40102043 (+)
XLOC_033931 BX957297.4 non-coding upstream 1034683 38678418 ~ 38678532 (+)
XLOC_033929 BX957297.3 non-coding upstream 1063686 38649136 ~ 38649529 (+)
XLOC_033922 NA non-coding upstream 1366736 38315655 ~ 38346479 (+)
XLOC_033917 BX323797.2 non-coding upstream 1465468 38245927 ~ 38247747 (+)
XLOC_033916 BX323797.1 non-coding upstream 1476975 38229070 ~ 38236240 (+)
XLOC_033960 dre-mir-153a non-coding downstream 771736 40485510 ~ 40485590 (+)
XLOC_033963 CU041319.1 non-coding downstream 1156857 40870631 ~ 40870748 (+)
XLOC_033965 NA non-coding downstream 1248954 40962728 ~ 41104337 (+)
XLOC_033966 AL772146.1 non-coding downstream 1399127 41112901 ~ 41113295 (+)
XLOC_033975 BX005319.1 non-coding downstream 1745879 41459653 ~ 41460435 (+)

Expression

Expression of XLOC_033951(BX908792.2) in the Zebrafish Sample from each Developmental Stage of PRJEB12982

Boxplot with 18 boxes. Box plot charts are typically used to display groups of statistical data. Each data point in the chart can have up to 5 values: minimum, lower quartile, median, upper quartile, and maximum.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: -0.5 to 0.5.
End of interactive chart.

Expression of XLOC_033951(BX908792.2) in the Zebrafish Sample of PRJEB12982

Bar chart with 360 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: -0.5 to 0.5.
End of interactive chart.

Co-expression Network