G1477333 (LOC106565959)


Basic Information

Item Value
gene id G1477333
gene name LOC106565959
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 66339517 ~ 66339919 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1689626
TTTTAGTGTCCCTCAGGCAGCTCTTAGCATTGCACCTGAGCATGGTGTGCAGTGCGTGTGCAACACTGTAGATGGCAGCATAGACCCTGAAAGCTGACCTCTGCAGTATGGGCTTTGTCACTAGACTTATGTTGTCTAGGGACAGGTTCCAGCAGTCTGGGCATGGGTTCATACTATGGGTTGGCTCTGTATCTGGACCTGGTGAGGGCTGCCTGGCCCTCTCCTCTCTGATCCTGGAGAAGAGTTCCCTGGTGTAGGGTGTGAGCAGGCCCAGGATCTGGCTGTGGACTGTGAAGGCAATGATAGTGCCCACAGTGTGGATGTTTGGGAGAGTTGACACGTCACTGTTCAGGGCCCACGCATCGCTGGCCACCCAGACCCCTGTCAGATTCCTCCTGATCAC

Function

NR:

description
taste receptor type 1 member 3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1689626 True 403 lncRNA 0.55 1 66339517 66339919

Neighbor

gene id symbol gene type direction distance location
LOC110516128 LOC106565694 coding upstream 689541 65580256 ~ 65649976 (+)
LOC110494410 LOC106565693 coding upstream 760573 65572367 ~ 65578944 (+)
LOC118940487 oncmyk-dab coding upstream 786860 65523697 ~ 65552657 (+)
LOC118940493 NA coding upstream 884687 65453352 ~ 65454830 (+)
LOC110494396 LOC106565619 coding upstream 1324727 64996582 ~ 65014790 (+)
LOC110494417 LOC106565918 coding downstream 51477 66391396 ~ 66401187 (+)
pax7a pax7a coding downstream 125536 66465455 ~ 66527607 (+)
park7 park7 coding downstream 219558 66559477 ~ 66566440 (+)
kcnab2a kcnab2 coding downstream 226860 66566779 ~ 66780792 (+)
akr7a3 LOC100194670 coding downstream 445597 66785516 ~ 66790374 (+)
G1477332 NA non-coding upstream 49 66339203 ~ 66339468 (+)
G1477331 LOC106565959 non-coding upstream 891 66338270 ~ 66338626 (+)
G1477328 NA non-coding upstream 5336 66333957 ~ 66334181 (+)
G1477326 NA non-coding upstream 13011 66326289 ~ 66326506 (+)
G1477309 NA non-coding upstream 73257 66246455 ~ 66266260 (+)
G1477359 NA non-coding downstream 40734 66380653 ~ 66380931 (+)
G1477361 NA non-coding downstream 42438 66382357 ~ 66382585 (+)
G1477369 NA non-coding downstream 67364 66407283 ~ 66407572 (+)
G1477370 LOC106565917 non-coding downstream 69289 66409208 ~ 66410103 (+)
G1477371 LOC106565917 non-coding downstream 71873 66411792 ~ 66418996 (+)
G1477313 NA other upstream 49069 66288872 ~ 66290448 (+)
G1476898 NA other upstream 556182 65781779 ~ 65783335 (+)
G1476569 NA other upstream 872750 65418091 ~ 65466767 (+)
G1476520 NA other upstream 1012354 65325877 ~ 65327163 (+)
G1476510 NA other upstream 1035389 65303417 ~ 65304128 (+)
G1477578 LOC100194703 other downstream 217118 66557037 ~ 66557512 (+)
G1477697 NA other downstream 377454 66717373 ~ 66718688 (+)
iffo2b LOC106565910 other downstream 493653 66798767 ~ 66840370 (+)
LOC110494429 LOC106565956 other downstream 527606 66867211 ~ 66867881 (+)

Expression


Co-expression Network