G1477377


Basic Information

Item Value
gene id G1477377
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 66430920 ~ 66438462 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1689673
TAAAAGCCTTCTCCCTACTATGTGTCTCAGGATGCCCCACATATTTTCAGTCTTGTAATAGTCTCTCAGTCAAGAGATATTAAGAAAAGGTCAGCCAAAATCCAGTTAATTGTTTCAAGCCTGAGTAGTTTTGAAGTGCGCCTTTGAAATATTTCCCACAGGGTTTCCCAAACACTTCAATCTCAATGCCGCAGTAATACTCTGAACGCAGGCAGTAATGTTTTATCCACTGCAATTGTATTGCAGTTGTGTTTTGACACTGATTTATAAATCAGTTAGAGGTCTATTGTAAGTGTCATAAGCAATAGGCTACCAAGTAGTTGGCTGAGTTAGGTATTAATTCAGTGCACACCCTAAGCAAATTTAAATGGTTTAGACTTGGACTTCCTCATCTTGGAGCTCCTTGCCATTTAGTCACACCCTCTACATCTATTTCCGTAAGAAAGGTCAGTATAGGTAGTACAAAGAGTGGGGGCCAGATTCAGATTTGTCAATAAAGAGAGTATGAGACTTAAGAATAATGCCACTGaagtcaattcaacgtctattaaACGACGTGGAACAACTCTGATTccaccagtgtgtgcccagtgggttagaTAGTttgaaagaggagaagagggttCATTAAAGATTCAAAAGGTATCTTCAAAAAGACAATTCAAACATCATTTCCAAAATAAGATTGTCATGTCGTGtgtgtaggtggcagggaagtcaggcgcaggagaatcaaacttgGTATAATGGAGTAGTTAAATAACGTGAAACAAAAACTCCAAAACCAAAGtacataataaaataaatgtgggtacaagaacccgtacccaataaacaatctctgacaaagacatgaggggaaacagagggttaaatacacaacataataatgaatgggattggaaccaggtgtgtaggaagacaagacaaaaccaatggacaATGAAACATGgttcaatgatggctagaagacaagtgacgttgaccgccgagcatcgcccgaacagggagaggcatcgacttcgggcGAAGTCGTGACAAAGATTTTTCTTTGGGATATTGTCCCGGTTTCCTTGCACTTATTTTTATACAAAAGTGTACGCTTTGAGAAATTCCTCAGGCTGTTGCTAAAATCAGTTCATGTGTAGACAACAATCAAGTTGAAAATCTTAGTCCACAAATCCAGATCAATGTAGAAATCTTCAATCATGTATACCAAAAGCACAATCTTTGAATACAAAATATCCACCAAATGATCACACCTGCTGGATTATAAATTACCAACAAAAGTGCCAAGAGTGTGCCTTTGGAGCAAGCTCCAATGTTAAGGAATTGATAAAGCCTTATTGACAGTAGTTCTACACAAAACAATCACTCTGATAGTTGTGCGATAATGTGGATGGGATATCTGAATTTATTTGCCTTGTTCCACCTGAAACCTCTTGAAAGTTTTCAAGCCATCTAAAGTCAATATTACCTGTATTACTTACAATTGTTAGGTGGCTAGGGAAGGATATTGTCAATTATCAGTATTTAAATGTTTGTAAACTGTTCGATCAAAATAAATATAATCTTTGAATTGACAAGGGCAATGACTATGTAAACAAAAAATGTGTTTCAAGGTTACGGAAGTTATTGGGACTTTTTAATTCCCTTGAATGTAATATAGCATGTGGGTATGCTATTAACTATATGCACTTATAACCATCATTAATTATTCTATTCTGAAACTACATGTGGTTAAATTCTTTTTCAAATGTATAACCTCTCCACATGTTAAAATGTCTTCCTGCTCATGGTCTTCCTGCTTCTCAGTTGGATCAATGCATTTACACAAAGGTCAAGTAGACTGCAGTTCATAATTTAATTGAATAACATAATTTAATTGAAtaactgaacactacacaaaataacaacgaagagaaaacaaaacagttctgccaggtgaacagacactaaacagaaattaaacacccacaaccaaaatggggaaaacaggctacctaagtatgattctcaatcagagacaacgaacgacacctgcctctgattgagaaccatactaggccaaacacatagaaatataacaacctagaaaaaagaacatagactacccaccccaactcacgccctgaccaacctaacacaaagacataaaaaaggaactaaggtcagaacgtgacacttggGCAATATTTACCACATAGATTATAGATTATTTACCACATAGAATATTTACCACAGAATAAACCGGCAGTGCCGGTTTCCACACCGGTTTGCTCATGTATAACTCATTtctgaaaatatgtatttttttgctgGATTCCCTTTTCTCTTGAAACAGGAAATACACTTACTGGTAATCTGTTATGTACTTTATTATTCACCTTGTGATAAGCAATTGGCTACAGAGGCTAATACAAGGCATGGACAATCAAAGCCCTTAGCAGACTTAATTTACCCTCCCTGTTCTCCAGAGAGATGATCTCATGTTTTTATTTTGGTCTGGGTGTTGTTAGGTGTGCCTTCATTGACATCAcaaaccatgtttccatccacagtttttatgtggGTAATGTCATGCCGTATAAACGACAGCTGTGACAATTTTACAAATGCAGACAAATTGTTTGTTCAACCTGGTGGGCTCACACTGGGCACACTGGTTGAATCGACGTTGTttccaaaccatttcaattaaatgatgttgaaccaatgtggaatagatgttgaattgacatctgtacCCAGTGGGTTTGTCAGTAAAATGAATGATGtgagaaatggcagtggaaacacctttatgtgcaaatattgctATAATAAGcatcatatcaaagtaaactttGAGTCAAGATGATATGGTGTGGGGTCCTCCCACTATGATTCAGAGAAAACATGCAGTTTATTGGCTACAGATAAAGTAAAGTGGTGGAAGTGCAAGGTGATCTTGATACTCCTTTCTAATGAACATCGAGGGTTTTATActggtgacatgatgaccgatgcctgactgccgtttgacaagtAAAAATATTCTCTTATCCATGATAATCTAGTCATGTATAGTAACCTATCCCCAGCCTTCCCGtactgtatctgcaagctgttggtTAGCTAGCACACATGCCAAGACCAGaataggcacatttgctatttaaagcaacagtttgtgacaaaactatcggtagagttgaaaatgtgatggaaacacattgaacttgaTTTTTACTCAGTACAGGAAAACTTCATTGAAAAAGCACATGTGTGCACTACGCAGTGGTGATTTCagtatgtaaatcttggtggggcaaactcaatTTTTTTTGTGTAGTGGCTTTACTGGCATGcataacacaacactaaacaattgttgtgtctttggcatcattaaagtgaagacttattttatcaaatctattctctgtaattattattgcgtgattaaactaatcatgtaaatgcaaTTAACTAGGAAgccggggcaccaaggaaaatcttcagattacaaaatgataattttcctaatataacttttcagatattttaatatctgatcaattagtcttatAATTAATGAATCATTCTTTACCTCATGTTAGTCTCATTCCGAACgtgtcagcgattgggtgcagagtGAAAGCggagtcaggcgcaggacacaggtatggAGTAATCCAACTGAGTTTACTCAAAGAATAAAGCAAAATTGCAAAATGGAACATACAGCAAAACtctaacacaaacacaaccactaaCGACAAACAATCacggacagaacagaaatgtatgtcagatggttaaatagggaatgtaaaacaggtgtgtgtgtaatcagacaaaacagaaaaatggatcggtagtgactagaaagccggtaacgtcgaccgccgaacaccacccgaacaaggagaagggccgacttcggcggaagtagTGACAGAACGTCGTAAAtcgttggttatctgcacgaaacCAGTCTTTACTATAAATCATCCATACGtcaattgtcttaatcatttattttactaactaactaaacaatcacagaaatgcataacaaacaaacaaagtagatatggttacaaggaaatgataggggatgtGCCCTAGTGGTCTAAACCGATATGACGGTTTGGTAGACAAAGGGACTGAGAAGGGCGCGAAAGACAAAAgacactacacagttgataattacaATATATGAAATGCTAAttctttgcacatgaacgctcactcatttgggaataattgcaatcaatatatatatttacgctcagtgtgtcgtcatgatctctgttggaatcgtctgTCTTTCTGTTGGAATGTTCATCTGAACTTCTCTTTACGTCCCTGGATACTTCAGAGttccattcagaaatgttcttatagAATAGCTGTTTCGGCGGTTGTTGGTCTTCGCATCTCATGTTCACataattcctagctgcagactagtaattagtatcgaagatttgctcttattctgtcggtatcgatagtctcagagtttaatcACGTGGTATGGGGGGGcaaccgggggcaaactacctgccctccaggacacctacaccacccgatgtcacaggaaggccataaagatcatcaaggacatcaaccacccga

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1689673 True 4626 lncRNA 0.38 2 66430920 66438462

Neighbor

gene id symbol gene type direction distance location
LOC110494417 LOC106565918 coding upstream 29733 66391396 ~ 66401187 (+)
LOC110516128 LOC106565694 coding upstream 780944 65580256 ~ 65649976 (+)
LOC110494410 LOC106565693 coding upstream 851976 65572367 ~ 65578944 (+)
LOC118940487 oncmyk-dab coding upstream 878263 65523697 ~ 65552657 (+)
LOC118940493 NA coding upstream 976090 65453352 ~ 65454830 (+)
pax7a pax7a coding downstream 26993 66465455 ~ 66527607 (+)
park7 park7 coding downstream 121015 66559477 ~ 66566440 (+)
kcnab2a kcnab2 coding downstream 128317 66566779 ~ 66780792 (+)
akr7a3 LOC100194670 coding downstream 347054 66785516 ~ 66790374 (+)
iffo2b LOC106565910 coding downstream 360305 66798767 ~ 66840370 (+)
G1477381 NA non-coding upstream 3364 66427220 ~ 66427556 (+)
G1477378 LOC106565917 non-coding upstream 3883 66426660 ~ 66427037 (+)
G1477379 LOC106565917 non-coding upstream 6268 66424285 ~ 66424652 (+)
G1477371 LOC106565917 non-coding upstream 11924 66411792 ~ 66418996 (+)
G1477370 LOC106565917 non-coding upstream 20817 66409208 ~ 66410103 (+)
G1477510 NA non-coding downstream 82660 66521122 ~ 66522431 (+)
G1477570 NA non-coding downstream 113051 66551513 ~ 66551726 (+)
G1477576 NA non-coding downstream 117798 66556260 ~ 66556536 (+)
G1477594 NA non-coding downstream 140474 66578936 ~ 66579231 (+)
G1477598 NA non-coding downstream 144457 66582919 ~ 66583146 (+)
G1477313 NA other upstream 140472 66288872 ~ 66290448 (+)
G1476898 NA other upstream 647585 65781779 ~ 65783335 (+)
G1476569 NA other upstream 964153 65418091 ~ 65466767 (+)
G1476520 NA other upstream 1103757 65325877 ~ 65327163 (+)
G1476510 NA other upstream 1126792 65303417 ~ 65304128 (+)
G1477578 LOC100194703 other downstream 118575 66557037 ~ 66557512 (+)
G1477697 NA other downstream 278911 66717373 ~ 66718688 (+)
LOC110494429 LOC106565956 other downstream 429063 66867211 ~ 66867881 (+)

Expression


Co-expression Network