G1479442


Basic Information

Item Value
gene id G1479442
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 68095329 ~ 68098028 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1691891
ccaccttttgccttgatgacagctttgcacactcttggcattctctcaaccagcttcatgagatagtcacctggaatgctttcccaacagtcttgaaggagttcccacatatgctgaacacttgctGGCTGATTTTCCTTTACTCTacagtccaattcatcccaaaccatatcaattaggttgaggttgggtgtttgtggaggccaggtcatctgatgcagcactcatcactctccttcttgatcaaatagcccttacacagcctgaaggtgtgttttgggtcattgtcctgttgaaacacaaatagtcccattaagcgcaaagcagatgggatgatgtatcgctgcagaatgctgtggtagctatgctggttaagtgtgccttgaattttgaATAAGtcatagacagtgtcaccaacaccaacaaagcagccccacaccatcacacctcctccttcatgcttcacggtgggaactacacatgcagagatcatccgctcACCTGTCTCacgaagacacggcggttggaacaaaaaatatctaattttgactcattagaccaaaggacagatttccaccggtctaatgtccattgctcatgtttcttggccaaagcaagtcacttcttcttattggtgtcctttagtagtgttgtctttgcagcaattcgaccatgaaggccagatttacGCAGTCTccgctgaacagttgatgttgagatgtgtctgttactttaactctgtgaaccatttatttgggctgcaatctgaggtgcagttaattgccgatttctgattctggtaactctaatgaacttatcctctgccacagaggtaactctgggttttcctttcctgtggaagTCCTCATGAGAGCGAGTTTCagcatagcgcttgatgatttttgctactgcatttgaagaaactttcagttcttgacattttccgcattgactgatcagtaatgatggactgtcgtttctctttgcttatttgagctgttcttaccataatatggacttgatctttttcTTTCATacaccaaccctaccttgtcacaactcaactgattggctcaaacgcattaagaaggaaagaaattccacaaattatcttttaaaaaggcacacctgttaatttaaatgcattccaatgtcaagagtgtgcaaagatgtcatcaaggcgaagggtggcttctttaaagaatctcaaatataaaatatattttgatttgtttaacacttttttggttactacatgattccatattgtgttatttcatagctttgatgtcttcactattattctacaatgtagcgaatagtaaaaaaaaataagaaaaatccttgagtgagtaggttgtccaaacttttgactagaaCTGTATAGTGCATTATATTGTACAGATGTCGTattttaatttgagccagtttgctacagcaggaaaataatttaatataattatgtggattataattaatggatttGTTTGAGagaggttgatacatttttcattagggaaaatcaagtctgacattttaaagtgtaaGTTACAAACTTCTGCTTTTTAAACCTGGAATACATAAGTTTCTTATCAACAAAAGAGTgaccaaattaagatcctacatctgtacacctTTTACAGTTttctttttacctttatttaactaggcaagtcagttaaagtacaatttcttattttcaaggacagcctaggaacagtgggtaacctgccctgttcaggggcagaacgacagatttttaccttcggTTACTAGTcggacactctaaccactaggctaccctgccgccctacaCTGTATTGTGGCACAGTATTTCCTGTCTTTCCTGCACTATGCACATTGTTACTGTACTCTTATATTTGTCAGCTTGTCCTATCCTAACATTGCATTTGTAACAAAACAACATAATGTAAATATGGTATGCTGGCATCAATCAACACACTTCAATTGTAACACTGTCATTTGCATGTGGATGTTCATGTTTTTTTGCCCTATGAATCTCAAAGATGTCAAATGCACATTTCTACTGCAGTAAAAGATGGATTTATTTTAGTTTGTTATCAAATTATATCCTGATCATTTTTGACCCACGAAAAATCCATAAAATGTGTTCATACCAAACAAAAATAAACTCAGATTTTTAAATAGA
>TU1691892
ctacaatgtagcgaatagtaaaaaaaaataagaaaaatccttgagtgagtaggttgtccaaacttttgactagaaCTGTATAGTGCATTATATTGTACAGATGTCGTattttaatttgagccagtttgctacagcaggaaaataatttaatataattatgtggattataattaatggatttGTTTGAGagaggttgatacatttttcattagggaaaatcaagtctgacattttaaagtgtaaGTTACAAACTTCTGCTTTTTAAACCTGGAATACATAAGTTTCTTATCAACAAAAGAGTgaccaaattaagatcctacatctgtacacctTTTACAGTTttctttttacctttatttaactaggcaagtcagttaaagtacaatttcttattttcaaggacagcctaggaacagtgggtaacctgccctgttcaggggcagaacgacagatttttaccttcggTTACTAGTcggacactctaaccactaggctaccctgccgccctacaCTGTATTGTGGCACAGTATTTCCTGTCTTTCCTGCACTATGCACATTGTTACTGTACTCTTATATTTGTCAGCTTGTCCTATCCTAACATTGCATTTGTAACAAAACAACATAATGTAAATATGGTATGCTGGCATCAATCAACACACTTCAATTGTAACACTGTCATTTGCATGTGGATGTTCATGTTTTTTTGCCCTATGAATCTCAAAGATGTCAAATGCACATTTCTACTGCAGTAAAAGATGGATTTATTTTAGTTTGTTATCAAATTATATCCTGATCATTTTTGACCCACGAAAAATCCATAAAATGTGTTCATACCAAACAAAAATAAACTCAGATTTTTAAATAGAGATCATGTTGGGTTTTGGCATAGATACCTTTTACAGTGTCTGTAGCCATACTGTAGagtatactgtatgtgagaataGACCAAAAAGTATGGGCTTAAAAGGGTGCTTTGGGATATAGTGGTATAGTTCCAGGAATGACTGTGTACTTCATCATCCCAATTCTGACTCATTTAAATCCTCCATATGAATAGATTCATGACAAATAGCAGTAGCTCATAAACTGACTCCTAATGAATAACCTAATGTGGCCCTATGGTTTGGCAGCTAGATTTTCTAATGTAATACTACGTAGGAGGGAAAACAGATCATTTTCAAATGGGTCTAGCCGAACACTATCGAATTTGAAACCCAAAATGAAAATGAAAGGTAATTCTCCAGGCCTCAGGTGCAGTGTGGTGGCAAGGATTGCATTTTGGAATAAGAGTTGGTTCCTATACTCTTAGAtagaaagggttacaaaagggttctgcagctgtccccatagcagagcccgttttggttctaggtagaaccctttttggttccaggta
>TU1691893
ctacaatgtagcgaatagtaaaaaaaaataagaaaaatccttgagtgagtaggttgtccaaacttttgactagaaCTGTATAGTGCATTATATTGTACAGATGTCGTattttaatttgagccagtttgctacagcaggaaaataatttaatataattatgtggattataattaatggatttGTTTGAGagaggttgatacatttttcattagggaaaatcaagtctgacattttaaagtgtaaGTTACAAACTTCTGCTTTTTAAACCTGGAATACATAAGTTTCTTATCAACAAAAGAGTgaccaaattaagatcctacatctgtacacctTTTACAGTTttctttttacctttatttaactaggcaagtcagttaaagtacaatttcttattttcaaggacagcctaggaacagtgggtaacctgccctgttcaggggcagaacgacagatttttaccttcggTTACTAGTcggacactctaaccactaggctaccctgccgccctacaCTGTATTGTGGCACAGTATTTCCTGTCTTTCCTGCACTATGCACATTGTTACTGTACTCTTATATTTGTCAGCTTGTCCTATCCTAACATTGCATTTGTAACAAAACAACATAATGTAAATATGGTATGCTGGCATCAATCAACACACTTCAATTGTAACACTGTCATTTGCATGTGGATGTTCATGTTTTTTTGCCCTATGAATCTCAAAGATGTCAAATGCACATTTCTACTGCAGTAAAAGATGGATTTATTTTAGTTTGTTATCAAATTATATCCTGATCATTTTTGACCCACGAAAAATCCATAAAATGTGTTCATACCAAACAAAAATAAACTCAGATTTTTAAATAGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1691891 False 2170 lncRNA 0.38 1 68095329 68097498
TU1691892 False 1396 lncRNA 0.36 1 68096633 68098028
TU1691893 True 866 lncRNA 0.33 1 68096633 68097498

Neighbor

gene id symbol gene type direction distance location
LOC110493241 LOC106565891 coding upstream 466 68090205 ~ 68094863 (+)
dhrs3b dhrs3 coding upstream 310472 67775374 ~ 67784857 (+)
klhdc7a LOC106565897 coding upstream 342574 67747821 ~ 67752755 (+)
LOC110494440 LOC106565900 coding upstream 351573 67468416 ~ 67743756 (+)
LOC118940488 NA coding upstream 396458 67697840 ~ 67698871 (+)
si:ch211-220m17.5 LOC106565952 coding downstream 52002 68150030 ~ 68151429 (+)
LOC110494448 LOC106565889 coding downstream 178894 68276922 ~ 68320684 (+)
LOC118940544 NA coding downstream 220628 68318656 ~ 68318809 (+)
LOC110494450 NA coding downstream 224159 68322187 ~ 68395828 (+)
LOC110494452 LOC106565886 coding downstream 303711 68401739 ~ 68408133 (+)
G1479455 NA non-coding upstream 5407 68089615 ~ 68089922 (+)
G1479449 NA non-coding upstream 22367 68072570 ~ 68072962 (+)
G1479357 NA non-coding upstream 162784 67932340 ~ 67932545 (+)
G1479350 NA non-coding upstream 173932 67921146 ~ 67921397 (+)
G1479347 NA non-coding upstream 175325 67919759 ~ 67920004 (+)
G1479460 NA non-coding downstream 7907 68105935 ~ 68106186 (+)
G1479615 NA non-coding downstream 15383 68113411 ~ 68113705 (+)
G1479617 NA non-coding downstream 17040 68115068 ~ 68115292 (+)
G1479657 NA non-coding downstream 83780 68181808 ~ 68182080 (+)
G1479659 NA non-coding downstream 88150 68186178 ~ 68187003 (+)
G1478504 NA other upstream 431680 67661987 ~ 67663649 (+)
LOC110494429 LOC106565956 other upstream 1227449 66867211 ~ 66867881 (+)
iffo2b LOC106565910 other upstream 1260389 66798767 ~ 66840370 (+)
kcnab2a kcnab2 other upstream 1314537 66566779 ~ 66780792 (+)
G1479621 NA other downstream 24510 68122538 ~ 68125780 (+)
G1480254 pad other downstream 836298 68934326 ~ 68999183 (+)
nampt2 LOC106565851 other downstream 2552915 70638204 ~ 70656059 (+)
LOC110494494 atxn7 other downstream 2741592 70809971 ~ 70847390 (+)
G1483346 LOC106565841 other downstream 3080485 71178513 ~ 71180429 (+)

Expression


Co-expression Network