G1479670


Basic Information

Item Value
gene id G1479670
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 68224014 ~ 68225516 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1692133
AGAAAAACCAACAGGACTTCCTTTATTGGCTAACTTATTTCTATGAAATTCTGACAGGGGGTGACTTTTCATTCAGTGCTTTCGGGAAGTACGTACAAAGGACAAGGAATtaattgttttggtttgtttgtttaaaCCATACATACAAAATAGCATCTACTTTCCTTATTGTAACGTTTACACGATTGTTTTGGGAATCTATGTAAATTCTGTTTACTGTTtgtatatactgttttaatatattCATATTCAAAACTAGGGGAAAGTTACATTAGGTTTCTAATTTAGGAAAGGAACTGGCTTCTTTGAAAAGTTGCCTGATCCATAGTCATGGAACTGACAGACAACAAGGTGGGCAGCAACATTGCTTTGTCATTAATACTGGGAGGTTATTTACCCCATACAATGATTGATATAAATTCAGAGATATACCCTTCTCTTAAACCAACTGATATGACAGAATTCTTCACATAGTTTCGGTGTTACCTGAATAGTGATCAATACCAAAGTAAAATAACACAACCTATCCTATATGTTACAGTAGAAATAAAGTGATATCCTCTTATTTTCCCTAACCGTATATGCACAGCAACAACAAACCTCTAAAATATTTGAGCTTGTTGGTcatcaaaattgcactgataaacgatggggaatAGCCTGCTTGTCCTTCTGCAGCTTTCCTACCAATGCATACgttgtcccaaccaagcacccaaggTAACTGGCCAAAATTAataagcttgctagctagctactaccagacacaaatgagagaacaactCCTTGACAATTTTACTCGCCGAGCAGAGCTGattaggctgtttacatgttatatagagCATTCATGAATAACTATAACTTTTTTGGCCTACGGTTGCTGACACCGGTCTTATTCAGCAGGTCTTGCGTGTTCGTAAATTAATCCGTTATTCAGCGCTCTGGCACCCTCAGAGcactctgaaattggagtagatggCTAGTCATAGTGAATTTGCGAACGCAAGAGAAATGCTAACTTGATAACAGGCATTCAGCATAGCTACCAATCAAAGCGATTCACATTTATttctagctaaccaaatgacacgtgcatctctagctgtgtagCCATCAAAAAATGATATGAGGGGAAAAAGTTGGTGAATGTCCTCACTCACGTCCtcctagtagctagctagctatctagctaacgctaggctctgtgtttttagctagctacataaatagataccCTAGCATATTATCCATATTATgtctgacttgtgatcattgcccttgctagtttgattgtattgacattcccagccttagttacaatcgtcagtttttgtccaaaatatttaGTCATTGAAAATGAAACAGTGCATCCGGAATGGAGGCCAGTTGTGATTTACAACATAATGTATTTACAccaaatgtattggtgaattatattaatcatgcattgaactgcatccatctattctgccaacaatgccttaatgtacgtcatggaatgtt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1692133 True 1503 lncRNA 0.38 1 68224014 68225516

Neighbor

gene id symbol gene type direction distance location
si:ch211-220m17.5 LOC106565952 coding upstream 72585 68150030 ~ 68151429 (+)
LOC110493241 LOC106565891 coding upstream 129151 68090205 ~ 68094863 (+)
dhrs3b dhrs3 coding upstream 439157 67775374 ~ 67784857 (+)
klhdc7a LOC106565897 coding upstream 471259 67747821 ~ 67752755 (+)
LOC118940488 NA coding upstream 525143 67697840 ~ 67698871 (+)
LOC110494448 LOC106565889 coding downstream 51406 68276922 ~ 68320684 (+)
LOC118940544 NA coding downstream 93140 68318656 ~ 68318809 (+)
LOC110494450 NA coding downstream 96671 68322187 ~ 68395828 (+)
LOC110494452 LOC106565886 coding downstream 176223 68401739 ~ 68408133 (+)
LOC110494453 LOC106565884 coding downstream 183421 68408937 ~ 68414206 (+)
G1479668 NA non-coding upstream 1698 68222047 ~ 68222316 (+)
G1479667 NA non-coding upstream 2696 68221008 ~ 68221318 (+)
G1479666 NA non-coding upstream 3289 68220397 ~ 68220725 (+)
G1479662 NA non-coding upstream 25284 68198138 ~ 68198730 (+)
G1479659 NA non-coding upstream 37011 68186178 ~ 68187003 (+)
G1479675 NA non-coding downstream 20407 68245923 ~ 68246147 (+)
G1479679 LOC100286407 non-coding downstream 33410 68258926 ~ 68259987 (+)
G1479684 LOC100286407 non-coding downstream 38449 68263965 ~ 68265378 (+)
G1479722 NA non-coding downstream 182770 68408286 ~ 68408545 (+)
G1479725 NA non-coding downstream 199967 68425483 ~ 68425951 (+)
G1479621 NA other upstream 98234 68122538 ~ 68125780 (+)
G1478504 NA other upstream 560365 67661987 ~ 67663649 (+)
LOC110494429 LOC106565956 other upstream 1356134 66867211 ~ 66867881 (+)
iffo2b LOC106565910 other upstream 1389074 66798767 ~ 66840370 (+)
G1477697 NA other upstream 1505326 66717373 ~ 66718688 (+)
G1480254 pad other downstream 708810 68934326 ~ 68999183 (+)
nampt2 LOC106565851 other downstream 2425427 70638204 ~ 70656059 (+)
LOC110494494 atxn7 other downstream 2614104 70809971 ~ 70847390 (+)
G1483346 LOC106565841 other downstream 2952997 71178513 ~ 71180429 (+)
G1483638 NA other downstream 3156428 71381944 ~ 71382272 (+)

Expression


Co-expression Network