G1479679 (LOC100286407)


Basic Information

Item Value
gene id G1479679
gene name LOC100286407
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 68258926 ~ 68259987 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1692143
CAAAAATTGTGTTCCCCCTTGGAGTGTAGCCTCCAAAGTTGAACATGTGAGAGTGGTCAGCAGTGACGACAGTCATTGTGTCATATATGCTGGTCATGAGGCCGGCGTGGCCAATGGCCCGGTCCATCTCCACTGCCTCATGCAGGGCCTGCTTGGCTTTACCCTCGTGATGTCCGTGGTCGATGCGCCCCCCCTCCACCAGCAGGTAGAATCCGCTGGGGTTTTTCTTCAGGATCTTAATGGCCACCTCCACCATCTCTGTCAGTGAAGGATCTGTCTCATTGTTTCTCTCCAGGTCATAGGGAAGATCTCCAGGCTCAAACAGACCCAAAAGGTAATCCACACTATTAGGGTTTAGCGATAAAAGTTCCTTCTTGTTCCATACATAGTGGGCGTTCTTGTTTTTCATTCGGTTATTCCACTCCTCCACCAAGTTCCTTCTATCGATGCGGGTACCGAAGTGTTTCTTCTCTCCAGGATACTCCACATCTGACTGGTTTTTGGGGAACATgtacttcctccctcctcccataaTCACCTAGACATCCACCACAGAGGTAAAACATT

Function

NR:

description
alkaline phosphatase-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1692143 True 567 lncRNA 0.50 4 68258926 68259987

Neighbor

gene id symbol gene type direction distance location
si:ch211-220m17.5 LOC106565952 coding upstream 107497 68150030 ~ 68151429 (+)
LOC110493241 LOC106565891 coding upstream 164063 68090205 ~ 68094863 (+)
dhrs3b dhrs3 coding upstream 474069 67775374 ~ 67784857 (+)
klhdc7a LOC106565897 coding upstream 506171 67747821 ~ 67752755 (+)
LOC118940488 NA coding upstream 560055 67697840 ~ 67698871 (+)
LOC110494448 LOC106565889 coding downstream 16935 68276922 ~ 68320684 (+)
LOC118940544 NA coding downstream 58669 68318656 ~ 68318809 (+)
LOC110494450 NA coding downstream 62200 68322187 ~ 68395828 (+)
LOC110494452 LOC106565886 coding downstream 141752 68401739 ~ 68408133 (+)
LOC110494453 LOC106565884 coding downstream 148950 68408937 ~ 68414206 (+)
G1479675 NA non-coding upstream 12779 68245923 ~ 68246147 (+)
G1479670 NA non-coding upstream 33410 68224014 ~ 68225516 (+)
G1479668 NA non-coding upstream 36610 68222047 ~ 68222316 (+)
G1479667 NA non-coding upstream 37608 68221008 ~ 68221318 (+)
G1479666 NA non-coding upstream 38201 68220397 ~ 68220725 (+)
G1479684 LOC100286407 non-coding downstream 3978 68263965 ~ 68265378 (+)
G1479722 NA non-coding downstream 148299 68408286 ~ 68408545 (+)
G1479725 NA non-coding downstream 165496 68425483 ~ 68425951 (+)
G1479757 NA non-coding downstream 209803 68469790 ~ 68470847 (+)
G1479766 NA non-coding downstream 219624 68479611 ~ 68479914 (+)
G1479621 NA other upstream 133146 68122538 ~ 68125780 (+)
G1478504 NA other upstream 595277 67661987 ~ 67663649 (+)
LOC110494429 LOC106565956 other upstream 1391046 66867211 ~ 66867881 (+)
iffo2b LOC106565910 other upstream 1423986 66798767 ~ 66840370 (+)
G1477697 NA other upstream 1540238 66717373 ~ 66718688 (+)
G1480254 pad other downstream 674339 68934326 ~ 68999183 (+)
nampt2 LOC106565851 other downstream 2390956 70638204 ~ 70656059 (+)
LOC110494494 atxn7 other downstream 2579633 70809971 ~ 70847390 (+)
G1483346 LOC106565841 other downstream 2918526 71178513 ~ 71180429 (+)
G1483638 NA other downstream 3121957 71381944 ~ 71382272 (+)

Expression


Co-expression Network