G1479684 (LOC100286407)



Basic Information


Item Value
gene id G1479684
gene name LOC100286407
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 68263965 ~ 68265378 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>TU1692150
tcgattttatacacctataagcaacgggtgtggctgaaatagccgaatccactaatttgaaggagtgtccacatacttttgtataaaaCGTGTAATTGCTGTGACTCACATCAATGTTAGGAATGTTCTCAAAGAGCTGCCTGGCGATGTCCTTGCAGCCCGCCTCTACTGCCTCAGCGGGCATTTCTCCATCGGAGTACCAGTCCCTGTCCACACAGTGGGCATAGGCTGCACTGGGGGTGGCATGGTTCACACGCGTTGTCGTGACTATTCCCACTGACTTGCCGGCTTCCTTGGCCCATCTGAGGATGGAGGTGACCTCGTTGCCCTGTGTGGTGTTGCACTGGGAACGTACGGCAGCTGCACTCACACCCACCGTGCCCTCGTTGGCCTTCACCCCACAGAGGTATGCTGTGGCTGTACCCGCACTGTCTGCAACCTGGGCATTGGTGTTATATGTCTTGGAAAGCGCAACATAGGGGAACTTGTCCATCTCCAGCTGGGTCTCTTCCCCACTCTGTCTGCTCAGCTGCCCCTTCAGTATTCGTGCTGCC
>TU1692151
TGAGATCCATGCATGCCTAGGATTACAATGTTATCATGGTGTGTCTCGACTGCTTATCTCAGGTTGGCCAAATAAGGCTTAATAGGTCTGGTATGGAAAGGTACTGTGAAAAAACAGGAGTTATAATGAGACATTACCGGCTTCCTTGGCCCATCTGAGGATGGAGGTGACCTCGTTGCCCTGTGTGGTGTTGCACTGGGAACGTACGGCAGCTGCACTCACACCCACCGTGCCCTCGTTGGCCTTCACCCCACAGAGGTATGCTGTGGCTGTACCCGCACTGTCTGCAACCTGGGCATTGGTGTTATATGTCTTGGAAAGCGCAACATAGGGGAACTTGTCCATCTCCAGCTGGGTCTCTTCCCCACTCTGTCTGCTCAGCTGCCCCTTCAGTATTCGTGCTGCC

Function


NR:

description
alkaline phosphatase, partial

GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU1692150 False 554 lncRNA 0.54 3 68263965 68265378
TU1692151 True 406 lncRNA 0.52 2 68264575 68265378
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Neighbor


gene id symbol gene type direction distance location
si:ch211-220m17.5 LOC106565952 coding upstream 112536 68150030 ~ 68151429 (+)
LOC110493241 LOC106565891 coding upstream 169102 68090205 ~ 68094863 (+)
dhrs3b dhrs3 coding upstream 479108 67775374 ~ 67784857 (+)
klhdc7a LOC106565897 coding upstream 511210 67747821 ~ 67752755 (+)
LOC118940488 NA coding upstream 565094 67697840 ~ 67698871 (+)
LOC110494448 LOC106565889 coding downstream 11544 68276922 ~ 68320684 (+)
LOC118940544 NA coding downstream 53278 68318656 ~ 68318809 (+)
LOC110494450 NA coding downstream 56809 68322187 ~ 68395828 (+)
LOC110494452 LOC106565886 coding downstream 136361 68401739 ~ 68408133 (+)
LOC110494453 LOC106565884 coding downstream 143559 68408937 ~ 68414206 (+)
G1479679 LOC100286407 non-coding upstream 3978 68258926 ~ 68259987 (+)
G1479675 NA non-coding upstream 17818 68245923 ~ 68246147 (+)
G1479670 NA non-coding upstream 38449 68224014 ~ 68225516 (+)
G1479668 NA non-coding upstream 41649 68222047 ~ 68222316 (+)
G1479667 NA non-coding upstream 42647 68221008 ~ 68221318 (+)
G1479722 NA non-coding downstream 142908 68408286 ~ 68408545 (+)
G1479725 NA non-coding downstream 160105 68425483 ~ 68425951 (+)
G1479757 NA non-coding downstream 204412 68469790 ~ 68470847 (+)
G1479766 NA non-coding downstream 214233 68479611 ~ 68479914 (+)
G1479778 NA non-coding downstream 230454 68495832 ~ 68496046 (+)
G1479621 NA other upstream 138185 68122538 ~ 68125780 (+)
G1478504 NA other upstream 600316 67661987 ~ 67663649 (+)
LOC110494429 LOC106565956 other upstream 1396085 66867211 ~ 66867881 (+)
iffo2b LOC106565910 other upstream 1429025 66798767 ~ 66840370 (+)
G1477697 NA other upstream 1545277 66717373 ~ 66718688 (+)
G1480254 pad other downstream 668948 68934326 ~ 68999183 (+)
nampt2 LOC106565851 other downstream 2385565 70638204 ~ 70656059 (+)
LOC110494494 atxn7 other downstream 2574242 70809971 ~ 70847390 (+)
G1483346 LOC106565841 other downstream 2913135 71178513 ~ 71180429 (+)
G1483638 NA other downstream 3116566 71381944 ~ 71382272 (+)

Expression


G1479684(LOC100286407) Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 6.
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G1479684(LOC100286407) Expression in each Bioproject

Bar chart with 17 bars.
G1479684(LOC100286407) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 40.
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Co-expression Network