G1480126


Basic Information

Item Value
gene id G1480126
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 68706709 ~ 68708059 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1692708
tgcacataataccccataatgacaaagcaaaaacaggtttgtagaaattgtagcaaatgtataaaatctaaaatacagaagaattacatttacataagtattcataccctttgctcagtacttggttgaagcacctttggcagcgattacagccttgagtcttcttaggtaggaccctacaagcttggcacacctgtattttgggagctCCTCCCATTCTTcattgcagatcctctcaagctctgtcaggttggatgaggagagtcgctgcacagctatttccaggtccctcaagagatgttcgatcgggttcatgtccgggctctggctgggctattcaaggacattcagagacttgtcccgaagccactcctgcattgtcttggctgtctaCTTCGGGTCGTTgtcgtgttggaaggtgaaccttcgcctcagtctgaggtcctgagctctctggagcaggttttcatcaagattctctctgtactttgctctgttcatctttccctcgattctgattAGTTTCCCAGACCCTACCactgaacaacatccccacagcatgatactgtccccaccacgcttcaccgtagggatggtgccaggtttacaccagatgtgaagcttggcattcagtccaaagatatcaatcttggtttcatcagacgagagtatcttgtttctcatggtctgagagtctttaggtgcctgaGGAGTACCTTCCatatggccactctaccataaaggcttgattggtagagtactgcaaagatggttgtccttctggaaggttctgccatctccgcagaggaactctgaagctctgtcagagtgacagtcggattcttggtcacctccctgaccaaggcccttctccccagattgctcagtttggcccgagtggccagctctaggaagagttttgttggttccaaaattcttccatttaagaatgatgaaggacactgtgttcttggggaccttcaatgctgcagaaatgttttggtactcttccccagatctgtgccttgacacaatgcTATCTGGGAGCTCTtgaggacaattccttcgacctcatggcttggtttttgctctgacatgcactgtcaactgtgggactttatatagacaggtgtgtgcctttccaaatccagTCCACTCAATTGTATtcaccacagctggactccaatcaagttgtagaaacatctcaaggatgatcaatggaaacaggatgcacctgagctcaattttgaggctcacagcaaagggtctgaatacccatgtaaataaggtatttctgtttattttttatgaatatgcaaaaataaaaactgtttttgctttgtcattatgg

Function

NR:

description
TC1-like transposase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1692708 True 1351 lncRNA 0.45 1 68706709 68708059

Neighbor

gene id symbol gene type direction distance location
LOC110494465 NA coding upstream 35027 68669132 ~ 68671682 (+)
LOC101268937 LOC106565877 coding upstream 81657 68601930 ~ 68625052 (+)
LOC110494461 LOC106565878 coding upstream 113091 68526861 ~ 68593618 (+)
LOC110494460 LOC106565879 coding upstream 218975 68484786 ~ 68487734 (+)
LOC110493242 kif17 coding upstream 286785 68418717 ~ 68419924 (+)
LOC110494470 LOC100380857 coding downstream 219905 68927964 ~ 68950793 (+)
LOC110494469 LOC106565869 coding downstream 269641 68977700 ~ 68999543 (+)
LOC110494475 LOC106565865 coding downstream 529647 69237706 ~ 69283003 (+)
LOC110494476 LOC106565864 coding downstream 580745 69288804 ~ 69296982 (+)
LOC110494479 LOC106565861 coding downstream 640826 69348885 ~ 69354495 (+)
G1480123 NA non-coding upstream 42674 68662168 ~ 68664035 (+)
G1480120 NA non-coding upstream 46247 68631808 ~ 68660462 (+)
G1480121 NA non-coding upstream 58693 68641295 ~ 68648016 (+)
G1480103 NA non-coding upstream 108421 68597978 ~ 68598288 (+)
G1480102 NA non-coding upstream 109350 68597135 ~ 68597359 (+)
G1480112 NA non-coding downstream 1787 68709846 ~ 68710426 (+)
G1480144 NA non-coding downstream 2894 68710953 ~ 68712162 (+)
G1480152 NA non-coding downstream 22738 68730797 ~ 68731068 (+)
G1480157 NA non-coding downstream 29734 68737793 ~ 68738016 (+)
G1480160 NA non-coding downstream 32516 68740575 ~ 68740809 (+)
G1479621 NA other upstream 580929 68122538 ~ 68125780 (+)
G1478504 NA other upstream 1043060 67661987 ~ 67663649 (+)
LOC110494429 LOC106565956 other upstream 1838829 66867211 ~ 66867881 (+)
iffo2b LOC106565910 other upstream 1871769 66798767 ~ 66840370 (+)
G1477697 NA other upstream 1988021 66717373 ~ 66718688 (+)
G1480254 pad other downstream 226267 68934326 ~ 68999183 (+)
nampt2 LOC106565851 other downstream 1942884 70638204 ~ 70656059 (+)
LOC110494494 atxn7 other downstream 2131561 70809971 ~ 70847390 (+)
G1483346 LOC106565841 other downstream 2470454 71178513 ~ 71180429 (+)
G1483638 NA other downstream 2673885 71381944 ~ 71382272 (+)

Expression


Co-expression Network