G1480170


Basic Information

Item Value
gene id G1480170
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 68754789 ~ 68755685 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1692758
tcctagatctgaatgaatgaaatattcttattaacctgttagagctctaggggcgctatttcatttttggataaaaaacgttcccgttttaagcgcaatattttgtcacgaaaagatgctcgactatgcatattcttgacagttttggaaagaaaacactctgaagtttcagaatctgcaaagattttgtctgtaagtgccccagaactcattctacaggcgaaaccaagatgatgcatcacccaggaattagcagaatttctgaagctctgttttccattctctccttatatggctgtgattgcgcaacgaatgagcctacactttctgtcgttcgcccaaggtcttagcagcattgtgacgtatttgtaggcatatcattggaagattgaccataagagactacattttccaagtgtccgcctggtgtcctgcgtcgaattcggtgcgcaattgccagctgcttctactttaccatttgattcaggggagaaagcatgtgtccaagaacgatgtatcaatgaagagatatgtgaaaaacaccttgatgattgattctaaacaacgtttgccatgttttcagtcgatattatggagttaatttggagaaaagttcgcgttttgaggactgaattttcggattttttttggtagccaaatgtgatgtataaaacggagctatttctaatacacaaggaatctttttggaaaaactgagcatctgctatctaactgagagtatcctcattgaaaacatcagaagttcttcaaaggtaaattattttatttgaaggcttttatgtttttgttaatgttgcgtgctggatgctaacgctaatgctaacgctaaatgctaactcgaaatgctaacgctagctagctacttttacacaaatg

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1692758 True 897 lncRNA 0.39 1 68754789 68755685

Neighbor

gene id symbol gene type direction distance location
LOC110494465 NA coding upstream 83107 68669132 ~ 68671682 (+)
LOC101268937 LOC106565877 coding upstream 129737 68601930 ~ 68625052 (+)
LOC110494461 LOC106565878 coding upstream 161171 68526861 ~ 68593618 (+)
LOC110494460 LOC106565879 coding upstream 267055 68484786 ~ 68487734 (+)
LOC110493242 kif17 coding upstream 334865 68418717 ~ 68419924 (+)
LOC110494470 LOC100380857 coding downstream 172279 68927964 ~ 68950793 (+)
LOC110494469 LOC106565869 coding downstream 222015 68977700 ~ 68999543 (+)
LOC110494475 LOC106565865 coding downstream 482021 69237706 ~ 69283003 (+)
LOC110494476 LOC106565864 coding downstream 533119 69288804 ~ 69296982 (+)
LOC110494479 LOC106565861 coding downstream 593200 69348885 ~ 69354495 (+)
G1480162 NA non-coding upstream 10663 68743549 ~ 68744126 (+)
G1480160 NA non-coding upstream 13980 68740575 ~ 68740809 (+)
G1480157 NA non-coding upstream 16773 68737793 ~ 68738016 (+)
G1480152 NA non-coding upstream 23721 68730797 ~ 68731068 (+)
G1480144 NA non-coding upstream 42627 68710953 ~ 68712162 (+)
G1480174 NA non-coding downstream 2735 68758420 ~ 68758686 (+)
G1480276 NA non-coding downstream 175151 68930836 ~ 68931098 (+)
G1480277 NA non-coding downstream 175541 68931226 ~ 68931467 (+)
G1480254 pad non-coding downstream 178641 68934326 ~ 68999183 (+)
G1480258 NA non-coding downstream 181592 68937277 ~ 68983735 (+)
G1479621 NA other upstream 629009 68122538 ~ 68125780 (+)
G1478504 NA other upstream 1091140 67661987 ~ 67663649 (+)
LOC110494429 LOC106565956 other upstream 1886909 66867211 ~ 66867881 (+)
iffo2b LOC106565910 other upstream 1919849 66798767 ~ 66840370 (+)
G1477697 NA other upstream 2036101 66717373 ~ 66718688 (+)
nampt2 LOC106565851 other downstream 1895258 70638204 ~ 70656059 (+)
LOC110494494 atxn7 other downstream 2083935 70809971 ~ 70847390 (+)
G1483346 LOC106565841 other downstream 2422828 71178513 ~ 71180429 (+)
G1483638 NA other downstream 2626259 71381944 ~ 71382272 (+)

Expression


Co-expression Network