G1480864 (LOC106565863)


Basic Information

Item Value
gene id G1480864
gene name LOC106565863
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 69332905 ~ 69333620 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1693532
TGCCAATCCCTGCCTATCACCCCACCAAGAGAACCCAGAGAATTACCTCATCCCACTCGGAGGCGAAGGAGGGCGATCTCTCCATCTGTTTGTTCCCAGAACTGCAGTTAGCCACAGACTCACAGCAGCTGTTCAGacccccatcctcctcacccaGGGGAGACACCAACAGGTCTGAGTCCGACTTGGAGAGGCTCCGGGTCAACTTTAGGTCCCCCGGAGGCTTCAGCCTGACTGGAGGGACAGCCACAGCCCCTGTCGACTCCCTGTCCTCAGCCTTGGCAGTGTGGACCACCGTGGCATAGATGGGATCAGCGTCCAGGAGGGAGGCTGACATTACTGTGGAGCTGCTTGTGTGGCAGTGTTAGGATCCTAGCCTCCCTGTACCCAGGCCTCAGGCAGCAGTCTCTCTTCTTGTACCAATGGTCAGTGCAGAGAGGGCTGTAAAACACTGGAGGATCCAGCAGTCTCAGTCTGTACAGAGCTTCCTGTTGAATTCTGAGGAAAAGCCAGAGAGAAGGGGTGATGTAAGAAACAGTGAGGCAGGAAATATCTCTGTCGTGACACTGATAAGAATCCGCCTACTAAATAATTTATGTTTAAAACATATTAAATCTATTCCATTTGGTGAAACGGAGCGTGTAAGAGAGAGGATTGCTGCGTGTGTCCATAGCTCAGATACAATCATCAGGGTCCACCCACTAGTTGTATCCGGC

Function

NR:

description
ankyrin repeat and SAM domain-containing protein 1A-like isoform X4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1693532 True 716 lncRNA 0.53 1 69332905 69333620

Neighbor

gene id symbol gene type direction distance location
LOC110494476 LOC106565864 coding upstream 35923 69288804 ~ 69296982 (+)
LOC110494475 LOC106565865 coding upstream 49902 69237706 ~ 69283003 (+)
LOC110494469 LOC106565869 coding upstream 333362 68977700 ~ 68999543 (+)
LOC110494470 LOC100380857 coding upstream 382112 68927964 ~ 68950793 (+)
LOC110494465 NA coding upstream 661223 68669132 ~ 68671682 (+)
LOC110494479 LOC106565861 coding downstream 15265 69348885 ~ 69354495 (+)
LOC118940683 NA coding downstream 17823 69351443 ~ 69351518 (+)
LOC118940682 NA coding downstream 20200 69353820 ~ 69353895 (+)
LOC110494481 spcs1 coding downstream 26659 69360279 ~ 69362518 (+)
LOC110494482 LOC106565858 coding downstream 38067 69371687 ~ 69429659 (+)
G1480860 NA non-coding upstream 4859 69327838 ~ 69328046 (+)
G1480859 NA non-coding upstream 5126 69327445 ~ 69327779 (+)
G1480855 NA non-coding upstream 9879 69322790 ~ 69323026 (+)
G1480853 NA non-coding upstream 14644 69318036 ~ 69318261 (+)
G1480852 NA non-coding upstream 16167 69316297 ~ 69316738 (+)
G1480870 NA non-coding downstream 5138 69338758 ~ 69339066 (+)
G1480872 NA non-coding downstream 7467 69341087 ~ 69341298 (+)
G1480883 LOC106583014 non-coding downstream 30165 69363785 ~ 69363993 (+)
G1480884 NA non-coding downstream 30510 69364130 ~ 69365532 (+)
G1480885 LOC106565859 non-coding downstream 31952 69365572 ~ 69366645 (+)
G1480254 pad other upstream 333722 68934326 ~ 68999183 (+)
G1479621 NA other upstream 1207125 68122538 ~ 68125780 (+)
G1478504 NA other upstream 1669256 67661987 ~ 67663649 (+)
LOC110494429 LOC106565956 other upstream 2465025 66867211 ~ 66867881 (+)
iffo2b LOC106565910 other upstream 2497965 66798767 ~ 66840370 (+)
nampt2 LOC106565851 other downstream 1317323 70638204 ~ 70656059 (+)
LOC110494494 atxn7 other downstream 1506000 70809971 ~ 70847390 (+)
G1483346 LOC106565841 other downstream 1844893 71178513 ~ 71180429 (+)
G1483638 NA other downstream 2048324 71381944 ~ 71382272 (+)
G1484782 NA other downstream 2971103 72304723 ~ 72305412 (+)

Expression


Co-expression Network