G1480884


Basic Information

Item Value
gene id G1480884
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 69364130 ~ 69365532 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1693553
CTTTGCAGTCCCCCTCGGAGTGATCTGTTGAGCTGGTGGAGGAGCTGCATTCGTCTTCGTCTGATGGGCGCCCCAAAAACCTGTCCTGCTACAGGAACACACACCACTGTTATAGACTGAAGCCATATTTTGAACTTGTAGCTTACTGAAACAGTAAGACAATGGAGATGAACCTATATAAACCAAACCTGGTTGGTTTCCTTTCCCATTTCAGGTACAGAGCGAGTGACAGTGGAGTTCTGGGACTCTGGCTGCTTATTATGTAAAGAGGCAACATCATAAGACGCCCTTCTTTCTGCATTGACAACTGTGGGAAAGAAGAATACTACAGTTAGCAATAGTAAGCAGAGCTGCCACTTTATTGTTCAAATAGGCAGACTATACTAGACAAAATGTCCTTTGCTAATTCCTTCTGGTCCCATGGTCATATGAAATATTGACAACAGAGGTTGGAGGA
>TU1693554
CCTATGTAACTACTGTGTAAATACATAGTATTAGGGGCACTTGTGAGTGGGACCAACACAACACACTTCTTTACAACATACATGCCAGACCTCAAGACAGTTTTTTTGTGTGCAGTAACACAAATCTACCTTGTTAATTGTTTAATCGATTTAGCCCACCTGTGGCAGTGGAGTGTTGCCGTTCTTGGAGGAGCTAATGGTTGTGACGGAAGTTGTTGTGGTGGCCCTCTTCTTATCTGTGTTTGTCCTGCTTCTCTTCTTCACCTCCAATACCAGTGCATTAataggaggaggtggtagaggtctAGGAGCTGCTACTTTATTC
>TU1693555
CCTATGTAACTACTGTGTAAATACATAGTATTAGGGGCACTTGTGAGTGGGACCAACACAACACACTTCTTTACAACATACATGCCAGACCTCAAGACAGTTTTTTTGTGTGCAGTAACACAAATCTACCTTGTTAATTGTTTAATCGATTTAGCCCACCTGTGGCAGTGGAGTGTTGCCGTTCTTGGAGGAGCTAATGGTTGTGACGGAAGTTGTTGTGGTGGCCCTCTTCTTATCTGTGTTTGTCCTGCTTCTCTTCTTCACCTCCAATACCAGTGCATTAataggaggaggtggtagaggtctAGGAGCTGCTACTTTATTCCACTGTAGAAGAACAAGCAAGGGATGTGGAGCCTTTTGTTATAAAGTACAGTTTGATAGCCCAAAGCCATGATAAAAATGTCCTGACACTGTCCTCACCATGTCCTGATCACTCTGTATCCGCCCCCTGTCCCTTTGTCTACGTTGGCAGGAGACAGAGGGttcagaggaggagggggtacaCAGAGGGGGTGTGTCCTGCTCTGGGACTGGGGGGAGGGGCTCCAAATGACAGGGTGCC

Function

NR:

description
serine/threonine-protein kinase Nek4-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1693553 False 457 lncRNA 0.44 1 69364130 69364586
TU1693554 False 325 lncRNA 0.44 1 69364968 69365292
TU1693555 True 565 lncRNA 0.48 1 69364968 69365532

Neighbor

gene id symbol gene type direction distance location
LOC110494481 spcs1 coding upstream 1612 69360279 ~ 69362518 (+)
LOC110494479 LOC106565861 coding upstream 9635 69348885 ~ 69354495 (+)
LOC118940682 NA coding upstream 10235 69353820 ~ 69353895 (+)
LOC118940683 NA coding upstream 12612 69351443 ~ 69351518 (+)
LOC110494476 LOC106565864 coding upstream 67148 69288804 ~ 69296982 (+)
LOC110494482 LOC106565858 coding downstream 6155 69371687 ~ 69429659 (+)
LOC110494487 ptprg coding downstream 734839 70100371 ~ 70415005 (+)
c17h3orf14 cssa12h3orf14 coding downstream 1055724 70421256 ~ 70429407 (+)
nampt2 LOC106565851 coding downstream 1272672 70638204 ~ 70656059 (+)
LOC110494491 synpr coding downstream 1306119 70671651 ~ 70712982 (+)
G1480883 LOC106583014 non-coding upstream 137 69363785 ~ 69363993 (+)
G1480872 NA non-coding upstream 22832 69341087 ~ 69341298 (+)
G1480870 NA non-coding upstream 25064 69338758 ~ 69339066 (+)
G1480864 LOC106565863 non-coding upstream 30510 69332905 ~ 69333620 (+)
G1480860 NA non-coding upstream 36084 69327838 ~ 69328046 (+)
G1480885 LOC106565859 non-coding downstream 40 69365572 ~ 69366645 (+)
G1480892 NA non-coding downstream 2707 69368239 ~ 69368894 (+)
G1480889 nek4 non-coding downstream 3853 69369385 ~ 69369639 (+)
G1480890 NA non-coding downstream 4458 69369990 ~ 69370283 (+)
G1480891 NA non-coding downstream 64731 69430263 ~ 69431020 (+)
G1480254 pad other upstream 364947 68934326 ~ 68999183 (+)
G1479621 NA other upstream 1238350 68122538 ~ 68125780 (+)
G1478504 NA other upstream 1700481 67661987 ~ 67663649 (+)
LOC110494429 LOC106565956 other upstream 2496250 66867211 ~ 66867881 (+)
iffo2b LOC106565910 other upstream 2529190 66798767 ~ 66840370 (+)
LOC110494494 atxn7 other downstream 1474088 70809971 ~ 70847390 (+)
G1483346 LOC106565841 other downstream 1812981 71178513 ~ 71180429 (+)
G1483638 NA other downstream 2016412 71381944 ~ 71382272 (+)
G1484782 NA other downstream 2939191 72304723 ~ 72305412 (+)

Expression


Co-expression Network