G1480885 (LOC106565859)


Basic Information

Item Value
gene id G1480885
gene name LOC106565859
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 69365572 ~ 69366645 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1693559
CTAAAATATTGTGATATCTCAATAATGTCTGGAGTCTGGTAGAGTAGACTATGCATGATCAAACACAGGTAAAATCATGTTCTTACCACAGGAGGAAGGGGCTCTAACAGCTTTTCTGTGGATACCAAGCTCTCCTTTAAAGACAATAACACAGAGGCTTACTCTCATTCACCAAATTTATGCCGTATGTCCACTGCATGCAGCACATGATAGTATCCTTCCCCATCCACAAACCAGGCACTTACTTTGACAACGGCAGTATGTTTGTGTGCAGGAATCTCCTTGAGAAGATTCCTGGTGTCATCCTTGTTCTCTATATTTACTTCAAACGTCTGTCCAGTGGATTCCACTTTGAGTTGTCCTGCAGACCTTAACTCAGAAAAACTGGTAGAAACACCCAGACATATACTATGTCCAGTAGCTGGGCTCTCAATGACCACATCCTTGAGTAGCTCCATTGTGTCATCTTTATCGTCCGTGTTCACAGTTTTCTCTACAGAGGTTCTGACTCGGTCTCTGGTCTTTGGGGCGCCCTGCATTACAGGTCCATTGGTGGTCTTGCTCTCCTCTTCCCTGGTACTGACACTTGATAGCAGCCTGGGCGGAtgaggcagggagggggggggatccGGATTCCCTCCCATCTGCTCCTCCACAGAGCTCTGACAAAGAGCGTCATTATCTGCCCTGGCGTTGGACACGGTCTGGGGAGGATCCCCTCTCTGGGCATTTGTCTCTTCCTGTGTCTGGAGATCAATGTCAATTTTACTGATGGTTGCCAAAGACACACCAGTGGTGTTGAGAATGTCTTGTGTAGGGGATTTGGTTGTTAGATGTGTCTGGGGTGGG
>TU1693560
CTAAAATATTGTGATATCTCAATAATGTCTGGAGTCTGGTAGAGTAGACTATGCATGATCAAACACAGGTAAAATCATGTTCTTACCACAGGAGGAAGGGGCTCTAACAGCTTTTCTGTGGATACCAAGCTCTCCTTTAAAGACAATAACACAGAGGCTTACTCTCATTCACCAAATTTATGCCGTATGTCCACTGCATGCAGCACATGATAGTATCCTTCCCCATCCACAAACCAGGCACTTACTTTGACAACGGCAGTATGTTTGTGTGCAGGAATCTCCTTGAGAAGATTCCTGGTGTCATCCTTGTTCTCTATATTTACTTCAAACGTCTGTCCAGTGGATTCCACTTTGAGTTGTCCTGCAGACCTTAACTCAGAAAAACTGGTAGAAACACCCAGACATATACTATGTCCAGTAGCTGGGCTCTCAATGACCACATCCTTGAGTAGCTCCATTGTGTCATCTTTATCGTCCGTGTTCACAGTTTTCTCTACAGAGGTTCTGACTCGGTCTCTGGTCTTTGGGGCGCCCTGCATTACAGGTCCATTGGTGGTCTTGCTCTCCTCTTCCCTGGTACTGACACTTGATAGCAGCCTGGGCGGAtgaggcagggagggggggggatccGGATTCCCTCCCATCTGCTCCTCCACAGAGCTCTGACAAAGAGCGTCATTATCTGCCCTGGCGTTGGACACGGTCTGGGGAGGATCCCCTCTCTGGGCATTTGTCTCTTCCTGTGTCTGGAGATCAATGTCAATTTTACTGATGGTTGCCAAAGACACACCAGTGGTGTTGAGAATGTCTTGTGTAGGGGATTTGGTTGTTAGATGTGTCTGGGGTGGGGTGTCCTGTGTGATTCCATTGCGTCCTTTGTGCTCCTGTGTGTTGATCTCTTCCTTCTATGAAttataacaaaaaaacagaacaaacacACCGCAATTAAAAAAATCAAGACACTTGTGGGACTTGATGAGCATCATTTTACTTCATGGCCGCTctctctaaaaaaatatatatatggatatacagtgccttgcgaaagtattcggcccccttgaactttgcgac
>TU1693558
AACACAGAGGCTTACTCTCATTCACCAAATTTATGCCGTATGTCCACTGCATGCAGCACATGATAGTATCCTTCCCCATCCACAAACCAGGCACTTACTTTGACAACGGCAGTATGTTTGTGTGCAGGAATCTCCTTGAGAAGATTCCTGGTGTCATCCTTGTTCTCTATATTTACTTCAAACGTCTGTCCAGTGGATTCCACTTTGAGTTGTCCTGCAGACCTTAACTCAGAAAAACTGGTAGAAACACCCAGACATATACTATGTCCAGTAGCTGGGCTCTCAATGACCACATCCTTGAGTAGCTCCATTGTGTCATCTTTATCGTCCGTGTTCACAGTTTTCTCTACAGAGGTTCTGACTCGGTCTCTGGTCTTTGGGGCGCCCTGCATTACAGGTCCATTGGTGGTCTTGCTCTCCTCTTCCCTGGTACTGACACTTGATAGCAGCCTGGGCGGAtgaggcagggagggggggggatccGGATTCCCTCCCATCTGCTCCTCCACAGAGCTCTGACAAAGAGCGTCATTATCTGCCCTGGCGTTGGACACGGTCTGGGGAGGATCCCCTCTCTGGGCATTTGTCTCTTCCTGTGTCTGGAGATCAATGTCAATTTTACTGATGGTTGCCAAAGACACACCAGTGGTGTTGAGAATGTCTTGTGTAGGGGATTTGGTTGTTAGATGTGTCTGGGGTGGG
>TU1693561
AACACAGAGGCTTACTCTCATTCACCAAATTTATGCCGTATGTCCACTGCATGCAGCACATGATAGTATCCTTCCCCATCCACAAACCAGGCACTTACTTTGACAACGGCAGTATGTTTGTGTGCAGGAATCTCCTTGAGAAGATTCCTGGTGTCATCCTTGTTCTCTATATTTACTTCAAACGTCTGTCCAGTGGATTCCACTTTGAGTTGTCCTGCAGACCTTAACTCAGAAAAACTGGTAGAAACACCCAGACATATACTATGTCCAGTAGCTGGGCTCTCAATGACCACATCCTTGAGTAGCTCCATTGTGTCATCTTTATCGTCCGTGTTCACAGTTTTCTCTACAGAGGTTCTGACTCGGTCTCTGGTCTTTGGGGCGCCCTGCATTACAGGTCCATTGGTGGTCTTGCTCTCCTCTTCCCTGGTACTGACACTTGATAGCAGCCTGGGCGGAtgaggcagggagggggggggatccGGATTCCCTCCCATCTGCTCCTCCACAGAGCTCTGACAAAGAGCGTCATTATCTGCCCTGGCGTTGGACACGGTCTGGGGAGGATCCCCTCTCTGGGCATTTGTCTCTTCCTGTGTCTGGAGATCAATGTCAATTTTACTGATGGTTGCCAAAGACACACCAGTGGTGTTGAGAATGTCTTGTGTAGGGGATTTGGTTGTTAGATGTGTCTGGGGTGGGGTGTCCTGTGTGATTCCATTGCGTCCTTTGTGCTCCTGTGTGTTGATCTCTTCCTTCTATGAAttataacaaaaaaacagaacaaacacACCGCAATTAAAAAAATCAAGACACTTGTGGGACTTGATGAGCATCATTTTACTTCATGGCCGCTctctctaaaaaaatatatatatggatatacagtgccttgcgaaagtattcggcccccttgaactttgcgac
>TU1693556
TTTGACAACGGCAGTATGTTTGTGTGCAGGAATCTCCTTGAGAAGATTCCTGGTGTCATCCTTGTTCTCTATATTTACTTCAAACGTCTGTCCAGTGGATTCCACTTTGAGTTGTCCTGCAGACCTTAACTCAGAAAAACTGGTAGAAACACCCAGACATATACTATGTCCAGTAGCTGGGCTCTCAATGACCACATCCTTGAGTAGCTCCATTGTGTCATCTTTATCGTCCGTGTTCACAGTTTTCTCTACAGAGGTTCTGACTCGGTCTCTGGTCTTTGGGGCGCCCTGCATTACAGGTCCATTGGTGGTCTTGCTCTCCTCTTCCCTGGTACTGACACTTGATAGCAGCCTGGGCGGAtgaggcagggagggggggggatccGGATTCCCTCCCATCTGCTCCTCCACAGAGCTCTGACAAAGAGCGTCATTATCTGCCCTGGCGTTGGACACGGTCTGGGGAGGATCCCCTCTCTGGGCATTTGTCTCTTCCTGTGTCTGGAGATCAATGTCAATTTTACTGATGGTTGCCAAAGACACACCAGTGGTGTTGAGAATGTCTTGTGTAGGGGATTTGGTTGTTAGATGTGTCTGGGGTGGG
>TU1693557
TTTGACAACGGCAGTATGTTTGTGTGCAGGAATCTCCTTGAGAAGATTCCTGGTGTCATCCTTGTTCTCTATATTTACTTCAAACGTCTGTCCAGTGGATTCCACTTTGAGTTGTCCTGCAGACCTTAACTCAGAAAAACTGGTAGAAACACCCAGACATATACTATGTCCAGTAGCTGGGCTCTCAATGACCACATCCTTGAGTAGCTCCATTGTGTCATCTTTATCGTCCGTGTTCACAGTTTTCTCTACAGAGGTTCTGACTCGGTCTCTGGTCTTTGGGGCGCCCTGCATTACAGGTCCATTGGTGGTCTTGCTCTCCTCTTCCCTGGTACTGACACTTGATAGCAGCCTGGGCGGAtgaggcagggagggggggggatccGGATTCCCTCCCATCTGCTCCTCCACAGAGCTCTGACAAAGAGCGTCATTATCTGCCCTGGCGTTGGACACGGTCTGGGGAGGATCCCCTCTCTGGGCATTTGTCTCTTCCTGTGTCTGGAGATCAATGTCAATTTTACTGATGGTTGCCAAAGACACACCAGTGGTGTTGAGAATGTCTTGTGTAGGGGATTTGGTTGTTAGATGTGTCTGGGGTGGGGTGTCCTGTGTGATTCCATTGCGTCCTTTGTGCTCCTGTGTGTTGATCTCTTCCTTCTATGAAttataacaaaaaaacagaacaaacacACCGCAATTAAAAAAATCAAGACACTTGTGGGACTTGATGAGCATCATTTTACTTCATGGCCGCTctctctaaaaaaatatatatatggatatacagtgccttgcgaaagtattcggcccccttgaactttgcgac

Function

NR:

description
serine/threonine-protein kinase Nek4-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1693559 False 849 lncRNA 0.48 1 69365572 69366420
TU1693560 False 1074 lncRNA 0.46 1 69365572 69366645
TU1693558 False 702 lncRNA 0.49 1 69365719 69366420
TU1693561 False 927 lncRNA 0.47 1 69365719 69366645
TU1693556 False 604 lncRNA 0.50 1 69365817 69366420
TU1693557 True 829 lncRNA 0.47 1 69365817 69366645

Neighbor

gene id symbol gene type direction distance location
LOC110494481 spcs1 coding upstream 3054 69360279 ~ 69362518 (+)
LOC110494479 LOC106565861 coding upstream 11077 69348885 ~ 69354495 (+)
LOC118940682 NA coding upstream 11677 69353820 ~ 69353895 (+)
LOC118940683 NA coding upstream 14054 69351443 ~ 69351518 (+)
LOC110494476 LOC106565864 coding upstream 68590 69288804 ~ 69296982 (+)
LOC110494482 LOC106565858 coding downstream 5042 69371687 ~ 69429659 (+)
LOC110494487 ptprg coding downstream 733726 70100371 ~ 70415005 (+)
c17h3orf14 cssa12h3orf14 coding downstream 1054611 70421256 ~ 70429407 (+)
nampt2 LOC106565851 coding downstream 1271559 70638204 ~ 70656059 (+)
LOC110494491 synpr coding downstream 1305006 70671651 ~ 70712982 (+)
G1480884 NA non-coding upstream 40 69364130 ~ 69365532 (+)
G1480883 LOC106583014 non-coding upstream 1579 69363785 ~ 69363993 (+)
G1480872 NA non-coding upstream 24274 69341087 ~ 69341298 (+)
G1480870 NA non-coding upstream 26506 69338758 ~ 69339066 (+)
G1480864 LOC106565863 non-coding upstream 31952 69332905 ~ 69333620 (+)
G1480892 NA non-coding downstream 1594 69368239 ~ 69368894 (+)
G1480889 nek4 non-coding downstream 2740 69369385 ~ 69369639 (+)
G1480890 NA non-coding downstream 3345 69369990 ~ 69370283 (+)
G1480891 NA non-coding downstream 63618 69430263 ~ 69431020 (+)
G1480888 NA non-coding downstream 65232 69431877 ~ 69434164 (+)
G1480254 pad other upstream 366389 68934326 ~ 68999183 (+)
G1479621 NA other upstream 1239792 68122538 ~ 68125780 (+)
G1478504 NA other upstream 1701923 67661987 ~ 67663649 (+)
LOC110494429 LOC106565956 other upstream 2497692 66867211 ~ 66867881 (+)
iffo2b LOC106565910 other upstream 2530632 66798767 ~ 66840370 (+)
LOC110494494 atxn7 other downstream 1472975 70809971 ~ 70847390 (+)
G1483346 LOC106565841 other downstream 1811868 71178513 ~ 71180429 (+)
G1483638 NA other downstream 2015299 71381944 ~ 71382272 (+)
G1484782 NA other downstream 2938078 72304723 ~ 72305412 (+)

Expression


Co-expression Network