G1480888


Basic Information

Item Value
gene id G1480888
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 69431877 ~ 69434164 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1693564
gcctagtcaaagcccagacctcaatccaattgagaatctgtggtatgacttaaagattgctgtacaccagcagaacccatcagATTTGAAGGAGccggagcagttttgccttgaagaatgggcaaaaatcgcagtggctagatgtgccaagcttacagagacataccccaagaaacttgcagctgtaattgctgcgaaaggtggctctacaaagtattgaattttggggggtgaatagttatgcacgctcaagttctctgttttttttgttttattttttgtttttttcacaggaaaaatatttagcatcttcaaagtggtaggcatattgtgtaaatcaaatgatacaaaccccccaaaatcaattttcattccaggttgtaaggcaacaaaataggaaaaatgccaaggggggtgaatacttccaCAAGCCGCTGTACACATTGACATTTGCTTACTCCAATTTAACAATCTGAACAAATCCTTTGATAAGAAAAGTATGTTAAGTTGTATTATCTGTTCTTTACATTTTTTTCGAAGTAAAttgaaaaatgtatatttgtatgcatatacagttgaagtctgaagtttacatacacttaggttggagtcattaaaacttgtttttcagccactccacaaatttcctgttaacaaactagagttttggcaagtcggttaggccatctactttgcgcatgacacaagtaatttttccaacaattgtttacagacagattatttcacttatcattcactatcacaattccagtgggtcagaagtttaccttgcctgtgcctttaaacagcttggaaaattccagaaaacgatgtcatggctttagaagcttctgataggctaattgacataattggagtcaattggaggtgtacctgtggatttatttcaaggcctaccttcaaacccagtgcctcttcgcttgacatcacgggaaactcaaaataaatcagccaagacctcagaaaaaaattgtagatctccacaagtctggtttatccttgggagtaattttcaaatgcctgaaggtaccacattcatctggaCAAACAATACTATGcagtaccgctcaggaaggagacgcgttctgtctcctagagttgaacgtactttggtgcgaaaagggcaaatcaatcccagaacaacagcaaaggaccttgtgaagatgctggaggaaacaagtacaaaagtatattttatccacagtaaaacgagtcctatattgacataacctgaaaggcagctcagcaaggaagaagccactgctccaaaaccgccataaaaaagccagactactgtttgcaactgcacatggggacaaagatcgtactttttggagaaatgtcctctggtctgataaaacaaatatagaactatttggccataatgaccatagttatgtttggaggaaaaagggggaggcttgcaagccgaagaacaccatcccagccgtgaagcacgagggtggcagcatcgtgttgtaggggtgcattgctgcaggagggactggtgcacttcaaaaaataaatggcatcatgaagaaggaaacgtatgtggatacattgaatcaacatctcaagacatcagtcaggatgttaaagcttagtcacaaatgggtcttccaaatgtacaatgaccccaagcatacttctgaaatggtggcaaaatggcttaaggacaacaaagtcaaggtattggagtggccatcacgaagctctggcctcaatcctatagaaaatgtgtatgtgagcaaggaggcctacaaacctggctcagctacaccagctctttcaggagtaatggaccaaaattcacccaacctccTGTTGTAAGTTTGTGGAAGGCAacctaaaacgtttgacccaatttaaacaatttcaaggcaaagctaccaaatactaacttctgacccactgggaatgtgatgaaagaaatactgtataagctgaaataaataattctctctactattattctgacatttcacattcttaaaataaagtggtgatcctatctgacctaaaacagggatttttactgagattaaatgtcaggaattgtgaaaaaccgagtttaaatctatttggccgaggtgtatgtaaacttccgacttcaattgtacctAATATTGTGTTTTGCAAAAGCTACAGTACTAATGTATGGATGCAATGCATCGTGAGTTATTGAGTATTAACTATGGAGTATTGTtaagtatcaaagccaatgattTGTTTTTTTGAACACATTTGCAAATGGATGGTATATTAAA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1693564 True 2288 lncRNA 0.39 1 69431877 69434164

Neighbor

gene id symbol gene type direction distance location
LOC110494482 LOC106565858 coding upstream 2218 69371687 ~ 69429659 (+)
LOC110494481 spcs1 coding upstream 69359 69360279 ~ 69362518 (+)
LOC110494479 LOC106565861 coding upstream 77382 69348885 ~ 69354495 (+)
LOC110494487 ptprg coding downstream 666207 70100371 ~ 70415005 (+)
c17h3orf14 cssa12h3orf14 coding downstream 987092 70421256 ~ 70429407 (+)
nampt2 LOC106565851 coding downstream 1204040 70638204 ~ 70656059 (+)
LOC110494491 synpr coding downstream 1237487 70671651 ~ 70712982 (+)
mx2 mx2 coding downstream 1293418 70727582 ~ 70738226 (+)
G1480891 NA non-coding upstream 857 69430263 ~ 69431020 (+)
G1480890 NA non-coding upstream 61594 69369990 ~ 69370283 (+)
G1480889 nek4 non-coding upstream 62238 69369385 ~ 69369639 (+)
G1480892 NA non-coding upstream 62983 69368239 ~ 69368894 (+)
G1480885 LOC106565859 non-coding upstream 65232 69365572 ~ 69366645 (+)
G1480927 NA non-coding downstream 3000 69437164 ~ 69437477 (+)
G1480928 NA non-coding downstream 3361 69437525 ~ 69437797 (+)
G1481101 NA non-coding downstream 13105 69447269 ~ 69447468 (+)
G1481163 fam107a non-coding downstream 87303 69521467 ~ 69524341 (+)
G1481209 LOC100194703 non-coding downstream 159812 69593976 ~ 69594305 (+)
G1480254 pad other upstream 432694 68934326 ~ 68999183 (+)
G1479621 NA other upstream 1306097 68122538 ~ 68125780 (+)
G1478504 NA other upstream 1768228 67661987 ~ 67663649 (+)
LOC110494429 LOC106565956 other upstream 2563997 66867211 ~ 66867881 (+)
iffo2b LOC106565910 other upstream 2596937 66798767 ~ 66840370 (+)
LOC110494494 atxn7 other downstream 1405456 70809971 ~ 70847390 (+)
G1483346 LOC106565841 other downstream 1744349 71178513 ~ 71180429 (+)
G1483638 NA other downstream 1947780 71381944 ~ 71382272 (+)
G1484782 NA other downstream 2870559 72304723 ~ 72305412 (+)

Expression


Co-expression Network