G1481163 (fam107a)


Basic Information

Item Value
gene id G1481163
gene name fam107a
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 69521467 ~ 69524341 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1693860
TCTGACCTTTTTAAGTGATTTTCCAGGTGGTTAAGGCGAGCGACAGGAAAGCCACTATTTTTGTGGAATGATCCAGACATTATCAGACCAAATGAAAGGTCACAGTGCAACTATCAATGCAGTGTTTGtcctttatttattttcttagaaAGGAATACAATTTTGTCCAGCTCTTTGTACCTCTCTTCTCAAACATGTACCATAGTAATTTGAAGTACAAACCTTTGTTATTCATAACAATCATTCTGTCATTGTGAAAGCTATTGAAATATTCATACATTAATATATTCATGCTTCTATGCAATGAAGAGACTGAAAAAGAAATGAGAGAATGTATTCATGTTTATAACATGTACAGTTTTGTAATATTAAACATCTTAAGTGGCTTCAGGAGTCAGTAAAGGCAGATATTTCATACAAGTATAACAATATTTGGTGCAAAAAACACCAAAATACAAATGGCCATCTATATGCAATCAGGATAAAAACatattaaagacatttaaaaaatgacatgCATAATTGATTGGTAAAATAAATGTTCAGATACATAATTTCAATGTTCTAAAGTGCCTTATGGAAATAAGATTCAAATgattgcattttattttgtatcgCTACATAATACTATTTAAAAAGCGCTGTGATACAATTACAAATGTGAGAATATCTACCTGGTCTCAGACCTTAAGCACAAAACATAAATATCCCTTTTCAAAACATGTATATCTTACAACAAAACGGTGAAATAGGGTTAGAGAAAAATCTGTCATTTAGTCTGCCATTTAGCAGATTCTTTTatacaatctcacacacacatacattgtaCGTATGGGTGGTCTCAGGAATTAAACTACCCTGGCgttacaagcgccatgctctaccaactgagctacaaagtaCCGCCATATCTGTCAGTCTCTTGTGTCTTCAACATGCATTCACACAACCACTCACACTCACCTACATACTGTACAAATACTCTTATCTGATTCCTCAGATCATGTGGTTTGATAGTATACCGTTGGTATAAGCGATACACGCACCACCATTTCATAAAGATAGCGTTCCTTGGTTTGAACTTTTTGATTAGGATGACATGCAGCTAGAGGTAGGAAGGCACTGTTAGAGATAGGTGCTTTCTCAGTGAGAGATTTCACATTGAGACATGTGACCTTGAATTGCAGATACATAAATGCCATTAGTAGGAGGAACATTTGATTGTTTACTGTTATTAACAATCTGTACTGATTGTGTGTGCAGGTACAGTGTGCTTCTTATACGGTAACCTAGAGAATTACTATTTGATATACACAGCCTAAGATGAAAAGTAACCACTGCTTTGTGACACACTTGAGAAAAACAACCAACTTTGGCTTTATCTCTTAACATCTTACGTGTCCTTGTTTCTAGTCATTGCAGTACGGAACACTACATCCACTAGTGAATAGCTTCTCCCCTCTTCTTCAGCCTGGTCTTATAGACTAgaagtaacatagtaaacgtaaatttGACacttgtatgatatgttatgtttggtatggttacataagacagaaggttacttaaggtaAAAGCAAAAGTAGGGTGATTGGTCGTGATGCATGAGTAGGCCTATAACacgaatgtctagcaacccaaaggttgtgtattcaaatctcatcacgggcaacatttagcattttagctaattaacaACTTTGCAGCTATTTACTaccttttagctactttgcaactgcttagcatgttagctaacccttcccctaacccaaaccctttaacctaactcctatccttaacccttaaccctaaccgttAGCTTAGTTAACGCTAGCcacttagctaacgttagcgagaacaaattggaattcgtatcATATTCGTATCATATCATATGTTCAGCAAATtcttaacatattgtacaaattcaTCCACAAACTAATTGATACCATACGAAATGAAACATATCATACTATTTGGCGTGTCCCGGaattacgtttactatgttacatctaccccCGAGTACAGGTTGTCCTTTTTGACCCTAACACTCACTCTCATGTCAGTTACTCTGGATTGAGATATCACAGATACAGTTTGAACTATCCCTGTAACAGTAGCCCATTGCAGAGTCAAccttccttctctgtctctcccgctgtGTCTCTGCTCTGAGTGGGTTAGTGAAGGCATTGTGTCATGGCTTGCCGACCAGTCCTTGTAGGTAGAAGTTCCTTGCTGTTGTCTTGAGTTGTGCAGTCAGAGCAACACAACACAGCTGTTCTGTGTCCACTCACGCGCATAATACACACAAGTGTACAAACTCCAGAAGATTCAAACTCAACGGTATACTTGGACCGTTTTGTCCCTtacacctctttctctccattatTGTGAAAGGACGTCCGTCTCAAGTTCTCCTTGACCTTGACAAACTCTGGGGCTCTCACGGTCTCCTCTTTTTTTCCCTGCTCCTTCTCCAGCTCTTCTAGCTTCTCCTTCCTCTTGAGGAGCTCTTGTTCCAGAGGGGAGATCTTCTTTCTGGCGtcatcttcctccttcctctgcttgaTGATCTGTTCCCTCTTCCTGGCCTCCAAGACACGCTGCAGCTCCGGCTTAGACTCCATCCCAACACCGCCACTcctgagagaccgagagagaaggtATTTACTAAGGTCATCTGCATTTTAATTTAACTTCAGTGTTTTCCTCTTGTCTCCAGCAGAGGGAACTCTAATTACGCTAAATGCTATGTTCTGATTTTG

Function

symbol description
fam107a Predicted to enable actin binding activity. Involved in several processes, including negative regulation of G1/S transition of mitotic cell cycle; negative regulation of focal adhesion assembly; and regulation of cytoskeleton organization. Located in several cellular components, including focal adhesion; ruffle membrane; and stress fiber.

NR:

description
protein FAM107B-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1693860 True 2768 lncRNA 0.39 2 69521467 69524341

Neighbor

gene id symbol gene type direction distance location
LOC110494482 LOC106565858 coding upstream 91808 69371687 ~ 69429659 (+)
LOC110494481 spcs1 coding upstream 158949 69360279 ~ 69362518 (+)
LOC110494479 LOC106565861 coding upstream 166972 69348885 ~ 69354495 (+)
LOC110494487 ptprg coding downstream 576030 70100371 ~ 70415005 (+)
c17h3orf14 cssa12h3orf14 coding downstream 896915 70421256 ~ 70429407 (+)
nampt2 LOC106565851 coding downstream 1113863 70638204 ~ 70656059 (+)
LOC110494491 synpr coding downstream 1147310 70671651 ~ 70712982 (+)
mx2 mx2 coding downstream 1203241 70727582 ~ 70738226 (+)
G1481101 NA non-coding upstream 73999 69447269 ~ 69447468 (+)
G1480928 NA non-coding upstream 83670 69437525 ~ 69437797 (+)
G1480927 NA non-coding upstream 83990 69437164 ~ 69437477 (+)
G1480888 NA non-coding upstream 87303 69431877 ~ 69434164 (+)
G1480891 NA non-coding upstream 90447 69430263 ~ 69431020 (+)
G1481209 LOC100194703 non-coding downstream 69635 69593976 ~ 69594305 (+)
G1481235 NA non-coding downstream 103165 69627506 ~ 69627710 (+)
G1481263 NA non-coding downstream 136172 69660513 ~ 69660812 (+)
G1481266 NA non-coding downstream 147263 69671604 ~ 69671811 (+)
G1481270 NA non-coding downstream 155458 69679799 ~ 69679999 (+)
G1480254 pad other upstream 522284 68934326 ~ 68999183 (+)
G1479621 NA other upstream 1395687 68122538 ~ 68125780 (+)
G1478504 NA other upstream 1857818 67661987 ~ 67663649 (+)
LOC110494429 LOC106565956 other upstream 2653587 66867211 ~ 66867881 (+)
iffo2b LOC106565910 other upstream 2686527 66798767 ~ 66840370 (+)
LOC110494494 atxn7 other downstream 1315279 70809971 ~ 70847390 (+)
G1483346 LOC106565841 other downstream 1654172 71178513 ~ 71180429 (+)
G1483638 NA other downstream 1857603 71381944 ~ 71382272 (+)
G1484782 NA other downstream 2780382 72304723 ~ 72305412 (+)

Expression


Co-expression Network