G1484829


Basic Information

Item Value
gene id G1484829
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 72371865 ~ 72372723 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1697812
CACTTTTGAAAATGTTTATTTCAAAAAATTTCCATGGCTTTGAAATAAAACATGACTTACAAGACTTTCCAAAACATTGACCAAAAGGTCTGACTCCCTTTCACTTATAAATAAAACATGCAGCTTTAGATTGATTATATCACTTGTGTTTTCCCTTTCCTGGAAGTTTACTATATGTAGTGACGACAAAATAGTTGCAAAGACAATTCTGCGGGGTTGATAAAATGGGCACATTTACAACATGTTGAAAGTTCCATCCCTGTCTGTCTACAACACACCAGTTTAATCAGAAAATGCAGAAAATAAACCCATTGTTTTAGAAAGTAAACAAATGATCATTACGGTAAGCACCAGTGGCAGCTTGTAATAGAAATAGTCATTTGTTGTAAGGAGTGTATGTATAGCACATCTACTGTTCTCTAACAAGGAAAATGGTAGCAGGTACTCTAAGTTTGCCAAGGCCATTGGATTTCTCTTAATTATCGCTACTGAGATGGACCTTGGGCTGTGTTGGCCTAGAAGGCTGTGTTAAAGACTCACTGcagaaaaaaattaaataataaataGCTGAAAAGTGATGTTGTGAACTTAAATTTAACCTTCATAATATACAAGAACTAGAATTAAACATACTTTTAGATTTATAAGACGACTGTGTTTTAGTCGTGTGTTTGACTCCACCAAACTGTCCTCGTGCTGCAGGCTTACAGTTCATCATGGCTGGGTGGGGGCTGCAGGCTTACAGCTCATCATGGCTGGGTGGGGGCTGCAGGCTTACAGTTCATCATGGCTGGGCGGGGGCTGCAGGCTTACAGTTCATCATGGCTGGGTGGGGGCTGCAGGCTTACAGTTCATCATG
>TU1697811
CTTTGAAATAAAACATGACTTACAAGACTTTCCAAAACATTGACCAAAAGGTCTGACTCCCTTTCACTTATAAATAAAACATGCAGCTTTAGATTGATTATATCACTTGTGTTTTCCCTTTCCTGGAAGTTTACTATATGTAGTGACGACAAAATAGTTGCAAAGACAATTCTGCGGGGTTGATAAAATGGGCACATTTACAACATGTTGAAAGTTCCATCCCTGTCTGTCTACAACACACCAGTTTAATCAGAAAATGCAGAAAATAAACCCATTGTTTTAGAAAGTAAACAAATGATCATTACGGTAAGCACCAGTGGCAGCTTGTAATAGAAATAGTCATTTGTTGTAAGGAGTGTATGTATAGCACATCTACTGTTCTCTAACAAGGAAAATGGTAGCAGGTACTCTAAGTTTGCCAAGGCCATTGGATTTCTCTTAATTATCGCTACTGAGATGGACCTTGGGCTGTGTTGGCCTAGAAGGCTGTGTTAAAGACTCACTGcagaaaaaaattaaataataaataGCTGAAAAGTGATGTTGTGAACTTAAATTTAACCTTCATAATATACAAGAACTAGAATTAAACATACTTTTAGATTTATAAGACGACTGTGTTTTAGTCGTGTGTTTGACTCCACCAAACTGTCCTCGTGCTGCAGGCTTACAGTTCATCATGGCTGGGTGGGGGCTGCAGGCTTACAGCTCATCATGGCTGGGTGGGGGCTGCAGGCTTACAGTTCATCATGGCTGGGCGGGGGCTGCAGGCTTACAGTTCATCATG
>TU1697813
CTTTGAAATAAAACATGACTTACAAGACTTTCCAAAACATTGACCAAAAGGTCTGACTCCCTTTCACTTATAAATAAAACATGCAGCTTTAGATTGATTATATCACTTGTGTTTTCCCTTTCCTGGAAGTTTACTATATGTAGTGACGACAAAATAGTTGCAAAGACAATTCTGCGGGGTTGATAAAATGGGCACATTTACAACATGTTGAAAGTTCCATCCCTGTCTGTCTACAACACACCAGTTTAATCAGAAAATGCAGAAAATAAACCCATTGTTTTAGAAAGTAAACAAATGATCATTACGGTAAGCACCAGTGGCAGCTTGTAATAGAAATAGTCATTTGTTGTAAGGAGTGTATGTATAGCACATCTACTGTTCTCTAACAAGGAAAATGGTAGCAGGTACTCTAAGTTTGCCAAGGCCATTGGATTTCTCTTAATTATCGCTACTGAGATGGACCTTGGGCTGTGTTGGCCTAGAAGGCTGTGTTAAAGACTCACTGcagaaaaaaattaaataataaataGCTGAAAAGTGATGTTGTGAACTTAAATTTAACCTTCATAATATACAAGAACTAGAATTAAACATACTTTTAGATTTATAAGACGACTGTGTTTTAGTCGTGTGTTTGACTCCACCAAACTGTCCTCGTGCTGCAGGCTTACAGTTCATCATGGCTGGGTGGGGGCTGCAGGCTTACAGCTCATCATGGCTGGGTGGGGGCTGCAGGCTTACAGTTCATCATGGCTGGGCGGGGGCTGCAGGCTTACAGTTCATCATGGCTGGGTGGGGGCTGCAGGCTTACAGTTCATCATG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1697812 False 859 lncRNA 0.39 1 72371865 72372723
TU1697811 False 787 lncRNA 0.39 1 72371902 72372688
TU1697813 True 822 lncRNA 0.40 1 72371902 72372723

Neighbor

gene id symbol gene type direction distance location
LOC110494505 LOC102209545 coding upstream 151791 71979900 ~ 72221849 (+)
LOC118940657 NA coding upstream 669164 71702645 ~ 71702701 (+)
LOC110493246 LOC106565837 coding upstream 683210 71678389 ~ 71688655 (+)
kbtbd8 LOC106565838 coding upstream 693849 71670655 ~ 71678016 (+)
slc25a26 slc25a26 coding upstream 853499 71449660 ~ 71518366 (+)
LOC110494508 LOC106565828 coding downstream 80636 72453359 ~ 72523767 (+)
LOC110494510 LOC106565827 coding downstream 174429 72547152 ~ 72585158 (+)
LOC110494511 LOC106565826 coding downstream 214065 72586788 ~ 72621297 (+)
LOC110494512 LOC106565824 coding downstream 228602 72601325 ~ 72612798 (+)
LOC110494513 LOC106565822 coding downstream 257599 72630322 ~ 72639097 (+)
G1484792 NA non-coding upstream 4925 72366386 ~ 72366940 (+)
G1484785 NA non-coding upstream 22370 72315123 ~ 72349495 (+)
G1484783 NA non-coding upstream 66138 72305525 ~ 72305727 (+)
G1484780 NA non-coding upstream 71199 72300354 ~ 72300666 (+)
G1484768 NA non-coding upstream 99250 72271792 ~ 72272615 (+)
G1484855 NA non-coding downstream 32077 72404800 ~ 72405207 (+)
G1484872 NA non-coding downstream 52593 72425316 ~ 72425560 (+)
G1484886 NA non-coding downstream 71785 72444508 ~ 72444723 (+)
G1484896 NA non-coding downstream 81230 72453953 ~ 72454156 (+)
G1484943 NA non-coding downstream 171438 72544161 ~ 72544443 (+)
G1484782 NA other upstream 66453 72304723 ~ 72305412 (+)
G1483638 NA other upstream 989593 71381944 ~ 71382272 (+)
G1483346 LOC106565841 other upstream 1191436 71178513 ~ 71180429 (+)
LOC110494494 atxn7 other upstream 1530635 70809971 ~ 70847390 (+)
nampt2 LOC106565851 other upstream 1715808 70638204 ~ 70656059 (+)
G1484897 NA other downstream 81840 72454563 ~ 72454924 (+)
LOC110494525 LOC106565811 other downstream 672014 73044346 ~ 73049958 (+)
G1485260 NA other downstream 750103 73122826 ~ 73125356 (+)
G1485819 NA other downstream 908537 73281260 ~ 73282019 (+)
G1486811 NA other downstream 1606167 73978890 ~ 73979435 (+)

Expression


Co-expression Network