G1485398


Basic Information

Item Value
gene id G1485398
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 72639467 ~ 72647548 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1698472
cttcacaaaaaaatacagttttatatctttatgtttgaagcctgaaatgtggcaaaggtcgcaaagttcaagggggccgaatactttcgcaaggcactgtatataggattGACTGAGtgaaacaaataaataaacaatgagacacacacacacactagcccagAGTCAGAGGTAGTGACCTATTCTATACTGATAGGTCCCGTGGGTACAAATAAGCAGCTCATTGGTTCTCTAACACCACACACTCgtccgtctgtctgcctgcccccAACATCATGTATGTACCCATGTCatccgtctgtctgcctgcccccAACATCATGTATGTACCCATGTCgtccgtctgtctgcctgcccccAACATCATGTATGTACCCATGTCGTCCGTCTGTCTGCCCTCACTTTTACTTACGTTCTATCTATGTTTGCTTttttgtttgcttatttcctgCCTTATCACTCCATCTAGAATTCAACTCCATGATTCAGATAAACATGGAGGCCccactaaatctctctctctttttctctccgtCTTCATTATCTCCTATTGTACCCAGATGAGATGTAATTGTGATTTAACAGAGGTGTGACAGTGAGGACACAAGACCTTCGTcatgaggaaaaaaacaaataAGATAAGCGATAGATGGAAATATGTACAGCACGTTATCAGCGATGTTAATTGTTTCCACATGAGgataatggagagagggaggaacctGAGAATATCCTCCCTGTTCCCCTGGCCTGTTCATGACTCCAGAGGTCAACAGCAGGTTACACTTTTCGCCTCCTCAGTCTGAATGGAGACACTTAATACCCCTCCACCTCCATGAAACCATTACTGTATCCCCTTaaaccaaacaacaacacagatctATTctgaaccacaacacttcaaGACATCAAACAACACAGATCTACTCTGAACCACAACACTTCATGACACCAAACAACACAGATCTACTCTGAACCACAACACTTCACAACATCAAACAACACAGATCTATTCTGAACCACAACACTTCACAACATCAAACAACACAGATCTACTCTGAACCACAACACTTCACGACATCAAACAACACAGATCTATTCTGAACCACAACACTTCACGACACCAAACAACACAGATCTACTCTGAACCACAACACTTCACGACACCAAACAACACAGATCTACTCTGAACCACAACACTTCACGACATCAAACAACACAGATCTATTCTGAACCACAACACTTCACAACATCAAACAACACAGATCTACTCTGAACCACAACACTTCACGACATCCAACAACACAGATCTACTCTGAACCACAACACTTCACGACACCAAACAACACAGATCTACTCTGAACCACAACACTTCACAACATCAAACAACACAGATCTATTCTGAACCACAACACTTCACGACATCAAACAACACAGATCTATTCTGAACCACAACACTTCACAACATCAAACAACACAGATCTACTCTGAACCACAACACTTCACGACATCAAACAACACAGATCTATTctgaaccacaacacttcaagacaccaaacaacacaacacaatagtaCAAGGCAATGTCACAATGCTTCACCCCACTGTGCCAGGGTCTGTGAGGAGACTAGTGAGGAGGCTGTAGTGTAGTCTACTGCAGGGTGATAAGCAGTGGGCACCAGGCCCGCGTGGGGGCGATGTCAGCGCCGGTCAGGTGTGTCCAAACAGCGCAGACAGGCAGGCGGGCGGGCTGGCGTCAGCGGCCACATGCGTGTCTCGGCACACAACACGCCAAGGGCCCGCATACTGCAGTTCCCACACACGTGTGCACAAAGAGTGCTTAGTCCCAGCATCACGCACCAGCGGCAACAGCAATGTGAAAAATTCTAACAGGGACAAAGGTACACCACAGGGGAAGGGTTGTGGGTGGGGGGTGAGTCCTGAGAGGTGAGGAAGGGTGAGGAAGTGGGTCAGGCATGGCCTGGGGTTGAGCGAGGTAGAGGCCACGGACAAGGGGAATGAGACACGAGTGACATGAACTAGCTTTTCTATGAAAGTTAACACACTTTGGATTTCACTGTAATGTAGTTTCATTTACTGTAATATTGAATTCCTACTAGGTAAAACTAAGTAATAGTCCAAATGTTGATGTTTAAAATTCAAACCACCAGAACAGCAGCCACGGCAAGTTGTCACAACCTCTAGGATATTACCATAAACATGATCCATATACCCAGAAATATCCTTATGATATATTAATGAGTGTGTTTAAACAAACAGTCGTTTCCATGGAATAAGATCCTTGAATTCCCCTACTATTTTAAAGTAAAGTTTAACCATGGAAACTACATGGTAATTTTTCTCAATCTCATAAATCCACTACTCATCAAACAGACTGCATGAGTATTGTTTTATGTCTTGGAgagtcaaatatttttttcatagGTTTCATGTGTCCAGCGTTGGAGTTTAGTAGTCCAAGGCCCAAGTTGCTGATACCGTTTACACTGAAAGAGATTATAGTAATGGGATAATGACTGAAGACCTGACAGCCACAGCTCACAGACACAACAACAGTATTGTCACAGGTCTCTGCTGCCCTCCTGTGGCTAATAATGGCACATACACTCTGCCTCAGGGCTGAGCTATCATGGCCACAAGCCTTTGAAAAGTCTTTAGGGACTTAATTATCAAGACTATAGGATGGAGTTGCTCCATTGATCTTTGATCGACCTATGACGATCAAAGAGAGAGAcacgtttagattttttttacttttttttttgcagGAGCCCGAAGTCAGCTCGCAGGTgcccgaagtcagcctgcaggcgcccgaaGTCAGCTCGCAGGTGCCCGAAGTCAGCTGGCAGGTgcccgaagtcagcttgcaggtgcctGAAGTCAGCTGGCAGGTgcccgaagtcagcttgcaggtgcccgAAGTCAGCTCGCAGGCACCCGAAGTCAGCTCGCAGGTGCCTggtccaccacaaggagtcgaaagagcacaatgggacaaggaaattctggccggccaaaccctctcctaacccggacgccgctggaccaattgtgcgccgcctcatgggctTCCCAGTCACGGTCGGCTGTGACATAGCCtaggatcaaacccgggtctgtagtgacgccttaggctgctgcgccactctggaggccagagagagagagagagagacattcagacGAACCACGCTTAGATATGCGTGGAAGTTGAAgttgcacacacatatacattctGGACTCAGCTCTCTGACTACAGTGTCAAAGGTGTGGTTTCTAAATGACTGTAGAGAACCTGCTGTATTTAAACAAAAACACTCTGTCTGGCTTATTAGCTCAGTCACTCTTCAAATTGCCTTTTAATAAAGACACCTTATGTGATGCTGTTGGGAAGTGACCTCATATCTGGATGAAGTAACTGGCATGAGCTGCGCCTTGTTAAACTGGGCAGAGCAAGGCCGAGGTCAGGTCTGGGCAAACCCTTTACCTCAAGTAGCCTGACGACACACTAAATTCTTCCGCTGCTCATTCACTACATACTTTAGTCTGATGAGACTGCCATCATTTAAGTAGTCTAGCAATGACCCCTCGTCATTGCTAGAAGGGATTCAGTTTTTGTCAGAATTGACTTCTCGAAACAGGCTTAGGAGAAtgtagcaaatcaaatcaaattggatttgtcacatgcgccgaatacaacaggtgtagaccagtGAAATGCACCAATGaaatgcagtgaaatgcttacatacaagcccttaaccaaccaatgcagttttaagaaaaataagggttaagtaaaaaatgtaaaataaaagtaacaaataattaaagagcagcaataaaataacaatagcgaggctttatacagggggtaccggtacagagtcaatgtccgggggcactggttagtcaaggtaattgaggtattttgtacatgtaggtagagttaaagtgattTACACAGCAGGTTTAAACTTATGCAGCAGGTCAGGAGAATAAACGTGGCAGCTTAGGATAATTAGGTTAggaaaaggtttagggttagctaaaatgcacaaaaacaaaacaaataaatctACTTTTGACGTAAATTTGACTTAAGCTAGATCACATCTAGACATGACCGCGACCACCGTGTCGAGGGGCTGTTGTATAAAAGTACTAAGTCATCAGTGATTGGATcttctctaaccaatcagaggcTTTGATTAATTTTCAAACTGTCActttacccacgtgtgttctggctctggcctaACCCATCGAGTGTGACCACATGTCCCGGATTGTGCGGGACAGTCCCACATTTTGTCCCGCGCTCCAGAACTATACAATCATATCCTTCATTTTATCAACAAATTGAAACAACACTATTTAGAAAAAAGGTAGATTTGTCCAGTATTTCAGTCAGACATTCTGACCTGTCTCTTGCAGTCATGTTGGCTTCTGAAAAGATATATACAGCTCTCGAAAAAGTTAAGAGAAAATGCAAAACTGCAAAATGATctgtttctctggttttactatttgtttgggtaaaattaaaatggttgttttattctataaactactgacaacatttctccaAACTTCCAAATACAAATATTGTCATTTGGTGCATTGATTTGCAGGAATTgactggtcaaaataacaaaaaagatgcagtgttgtcagacctggaataaacaacacaatactaatgttttaacttagAGGTCAGGAATCAATATTTGGTAGAGCAtgcgtcttggcatgctctccaccagtctttcacattgatgttgggtgactttCAAGCAGCTCAgctttgtttgatggcttgtgaccatccatcttcctcttgatcacattccatAGGTTTTCactggggttcaggtctggagattgggctggccatgacagggtcttgatctgttGTGTTCCCGCATGTGCTGCagccaccccccccaccccccaagcaccccattggttcctgcatgaACCCCCCCCCAAGCACTACATCTCCATGCTTGTGTGACACTTTGAATGTGGGTCAAACAGGAAATTAAAGTATTATCTGAGTTTTTTCGCACCTACAGTACTGGAGTGCCCCTGCCTCCCGCCTGTGTATCGGAGTCATAGCTTCAAAATGGACCAAAAATAGGTATAAAGAGGGGTTCCTTCAGATGCAGGACTGCCCACGGCAGGAATGCAGGATTTGCGGGTTGCATTAGCACCCTTCTCTAAATCCAGCTACACTTGGAGAGGACAGTTACGCCTAACTACTTACAAAAAGAATGCTTCTGATGAAGAGCTACAAAAGTAAGTAAATAACTGCATTAGACTGaaataaatgaatacattttATCAAACTTGTAAGGCTCTCCATGTCCATCAGTTGCTCATTCAACAGTTTCTGCTATTTCACCCAATCCCGTTTTAAAAGGCTCCCTTCTTAAGTGTTTTACATTCCCTAAGACCATATTTGGCCATGTTTCCTTCATAGAACAGTCACACGTGTGATCTCTCATTTCTGCTTCACCAAATTTTGAGTGAGGCAAAAGAGTAGGCTAGGTGCTTCAATTGCTCATTCGGTGCAGCTGACTGCAGGGGATGTAGTGCTGCCAGAGCACACCTCAGTGTCGCTCCGCCACTTCTCACAATGGTGCTCATTTAGGGACAGATCAAAATTaaaaatattttcacatgaccctccccttgtactgtaaaataaatgtaacacCCTCCCCCTTCATAGAATTAACTCCAAATAATTTTACACCCACAAATAACTGTAGTGACCCTGTGTTTATGAATGATGATATCAACTTTGCCacttcagcatgcttttgtggcacagttGATGCCATGCAGGGCTatgggccagaaggttgagggttcaccAACCACCTCGAGCTCACTCTCCCTGGCTGTTTCATTCTTCATGAGCTGAGCTGGttgcagacaatgatcagctagggggAATCAgatttttccatatgcacaaaaagcttagaacactaaaatgttgtgcacaatttggccaagataatccatccacctgacaggtgtggcatatcaagaagctgactaaaccacatgatcattacataggtgcaccttgtgcctgGGACAATAAAAACTGTgtcgtgcagttttgtcacacaacacaatgccacagaggtCTCAAGTtgaggcatgctgactgcaggaatgtccaccagagctgttgccagagaattgaatgttattttctctaccataagccgcctacaATATAATTTTTCAGAATtctgcagtacgtccaactggcctcacaaccgcatatCGTTATATCGGCgaatggtttgctgatgtcaacgttgtgagaGGAGTGACCCATGGTGGAGGTCGGGTTCTGATATggccaggcataagctacagacaacgaacacaattacacTTTAGTGATGACAATTCAAACGCACTGAGATACCgagacgagatcctgaggcccatgtTTCAGCCTCATAATGCACAGCccaatgtcgcaaggatctgtacacaattcctggaagctaaaaatgtacccgttcttccatggcctgcacattcaccagacatgtcacccattgagcatgtttgggatgctctggatcgatgtgtacaacagcgtgttccagttaccgccaatatccagcaacatcgcacagccattgaagaggagtgggacaacattccacaagccacaacaaacagcctgattaactctatgtgaaggagatgtgtcatgctgcatgaggcaaatggtcgtcacaccagatactgactggttttctgatccacgacctacttttttttaaaggtatctgtgtccaacagatccatagattagggcctaattaatttatttcaattgactgatttccttatatgaactgtaactctgtaaaatcgttgaaatggttgcatttatatttttgctcagtatacataacatatactgtattttccaactgtcctgtTATCTGGTTTTAATCTCCATTCTAGATTTcccttctagccaatcagaaacgagtattcaacaatgctgtggtatGAAGTCTGTTAACACCATCTGTTCTAATCTGCTCACAGATCTAAATGTGTACTCCCAagaaactgattgagatcaaatgattggcatgtaaacacatttcaataGTCAAACGTGAAGAATTATCATTCAGGATTGACAGTGATGATGCCATAGCCTATTTTGAAAAGAGGTGTGCCTAACTTGGTGTTTGAgggtataaaaatgtatgtgtgGGCATAGGCAGACGTTTCAATTGGAAGATGCATTTTATGTATATTCTATAATGAT

Function

NR:

description
Transposable element Tcb2 transposase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1698472 True 7351 lncRNA 0.44 3 72639467 72647548

Neighbor

gene id symbol gene type direction distance location
LOC118940491 NA coding downstream 103155 72528274 ~ 72536312 (-)
tmf1 tmf1 coding downstream 241588 72388124 ~ 72397879 (-)
eogt LOC106565831 coding downstream 251382 72371865 ~ 72388085 (-)
LOC118940490 LOC106565834 coding downstream 272494 72271332 ~ 72366973 (-)
suclg2 LOC106565836 coding downstream 760381 71744930 ~ 71879086 (-)
LOC118940156 NA coding upstream 61428 72708976 ~ 72709679 (-)
LOC118940157 NA coding upstream 62211 72709759 ~ 72715551 (-)
LOC110494514 LOC106565821 coding upstream 122648 72770196 ~ 72786814 (-)
LOC110494515 LOC106565820 coding upstream 151000 72798548 ~ 72818606 (-)
LOC110494517 NA coding upstream 181109 72828657 ~ 72830925 (-)
G1485391 LOC106565822 non-coding downstream 370 72600848 ~ 72639097 (-)
G1485388 NA non-coding downstream 103282 72535943 ~ 72536185 (-)
G1485376 NA non-coding downstream 123107 72512799 ~ 72516360 (-)
G1485363 NA non-coding downstream 143390 72493896 ~ 72496077 (-)
G1485355 NA non-coding downstream 160990 72477666 ~ 72478477 (-)
G1485403 NA non-coding upstream 14432 72661980 ~ 72663053 (-)
G1485456 NA non-coding upstream 15573 72663121 ~ 72664216 (-)
G1485477 NA non-coding upstream 36935 72684483 ~ 72684792 (-)
G1485484 NA non-coding upstream 52668 72700216 ~ 72700484 (-)
G1485488 NA non-coding upstream 61807 72709355 ~ 72709856 (-)
G1481574 NA other downstream 2853311 69785796 ~ 69786156 (-)
G1480410 NA other downstream 3931409 68706697 ~ 68708058 (-)
G1479993 NA other downstream 4140672 68498418 ~ 68498795 (-)
LOC110494447 LOC100286407 other downstream 4448387 68186985 ~ 68199023 (-)
G1479525 NA other downstream 4665844 67972249 ~ 67973623 (-)
LOC110495190 LOC106565948 other upstream 565914 73213462 ~ 73216641 (-)
LOC110494532 LOC106565803 other upstream 610364 73257684 ~ 73267411 (-)
LOC110494535 LOC106565947 other upstream 743333 73389357 ~ 73393639 (-)
LOC110494541 LOC106565798 other upstream 828198 73473726 ~ 73824081 (-)
G1487442 NA other upstream 1761420 74408968 ~ 74409990 (-)

Expression

G1485398 Expression in all Baseline Samples

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The chart has 1 Y axis displaying values. Range: 0 to 40.
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G1485398 Expression in each Bioproject

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G1485398 Expression in each Sample
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The chart has 1 Y axis displaying Expression. Range: 0 to 150.
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Co-expression Network