G1485065


Basic Information

Item Value
gene id G1485065
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 72790071 ~ 72790947 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1698076
CTTCAatatacattttagtcatttagaagacgctcttatccagagtgacttacagttagtgcattagttttaagatagctaggtgggacttACAGTTAGTACATTAgttttaagatagctaggtgggacttacagttagtgcattagttttaagatagctaggtgggacttacagttagtgcattagttttaagatagctaggtgggacttacagttagtgcattagttttaagatagctaggtgggacttacagttagtgcattagttttaagatggctaggtgggacttacagttagtgcattagttttaagatagctaggtgggac
>TU1698077
CTTCAatatacattttagtcatttagaagacgctcttatccagagtgacttacagttagtgcattagttttaagatagctaggtgggacttacagttagtgcattagttttaagatagctaggtgggacttacagttagtgcattagttttaagatagctaggtgggacttacagttagtgcattagtTTTAAGATGGCTAGgtgggacttacagttagtgcattagttttaagatggctaggtgggacttacagttagtgcattagttttaagatggctaggtgggacttacagttagtgcattagttttaagatagctaggtgggacttacagttagtgcattcgttttaagatggctaggtgggacttacagttagtgcattagttttaagatagctaggtgggac
>TU1698078
CTTCAatatacattttagtcatttagaagacgctcttatccagagtgacttacagttagtgcattagttttaagatagctaggtgggacttACAGTTAGTACATTAgttttaagatagctaggtgggacttacagttagtgcattagttttaagatagctaggtgggacttacagttagtgcattagttttaagatagctagGtgggacttacagttagtgcattcgtTTTAAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1698076 False 329 lncRNA 0.37 3 72790071 72790719
TU1698077 False 409 lncRNA 0.38 3 72790071 72790719
TU1698078 True 234 lncRNA 0.36 2 72790071 72790947

Neighbor

gene id symbol gene type direction distance location
LOC110494513 LOC106565822 coding upstream 150974 72630322 ~ 72639097 (+)
LOC110494511 LOC106565826 coding upstream 168774 72586788 ~ 72621297 (+)
LOC110494512 LOC106565824 coding upstream 177273 72601325 ~ 72612798 (+)
LOC110494510 LOC106565827 coding upstream 204913 72547152 ~ 72585158 (+)
LOC110494508 LOC106565828 coding upstream 266304 72453359 ~ 72523767 (+)
LOC110494516 LOC105017315 coding downstream 27221 72818168 ~ 72828562 (+)
LOC110494520 LOC106565815 coding downstream 71412 72862359 ~ 72864606 (+)
LOC110494525 LOC106565811 coding downstream 253399 73044346 ~ 73049958 (+)
LOC110494536 LOC106565804 coding downstream 575855 73366802 ~ 73384379 (+)
LOC110494537 LOC106565802 coding downstream 604793 73395740 ~ 73416687 (+)
G1485006 NA non-coding upstream 96594 72689644 ~ 72693477 (+)
G1484985 NA non-coding upstream 114404 72660006 ~ 72675667 (+)
G1484943 NA non-coding upstream 245628 72544161 ~ 72544443 (+)
G1484896 NA non-coding upstream 335915 72453953 ~ 72454156 (+)
G1484886 NA non-coding upstream 345348 72444508 ~ 72444723 (+)
G1485070 NA non-coding downstream 6948 72797895 ~ 72798215 (+)
G1485023 LOC106565817 non-coding downstream 55922 72846869 ~ 72852122 (+)
G1485196 NA non-coding downstream 232168 73023115 ~ 73036053 (+)
G1485233 NA non-coding downstream 296755 73087702 ~ 73087929 (+)
G1485238 NA non-coding downstream 303637 73094584 ~ 73094800 (+)
G1484897 NA other upstream 335147 72454563 ~ 72454924 (+)
G1484782 NA other upstream 484659 72304723 ~ 72305412 (+)
G1483638 NA other upstream 1407799 71381944 ~ 71382272 (+)
G1483346 LOC106565841 other upstream 1609642 71178513 ~ 71180429 (+)
LOC110494494 atxn7 other upstream 1948841 70809971 ~ 70847390 (+)
G1485260 NA other downstream 331879 73122826 ~ 73125356 (+)
G1485819 NA other downstream 490313 73281260 ~ 73282019 (+)
G1486811 NA other downstream 1187943 73978890 ~ 73979435 (+)
LOC110493252 LOC106565788 other downstream 1597589 74388428 ~ 74432420 (+)

Expression


Co-expression Network