G1485023 (LOC106565817)


Basic Information

Item Value
gene id G1485023
gene name LOC106565817
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 72846869 ~ 72852122 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1698032
gTCGTCATCTTCAAAGTTGTTTCTGTTGGGGGCATCGTTCTTAGGATTACGGGGAATGTCCTGTGGATCCTCACTTAACTCGTACTCCTGGACTTTGGGCTGTAGATTTTTGGATTTGGGTCGCCCAGGACCAGGCCCGTGACTACCCTTTCCATCGAGTTTCTGCTTCTTAGGTTTGTGACGTGATGAGGCTGAAAGGTCTGCATCCTTTCCCAGCTTCAGAAAGCGCTTGTCCCCTTTCTTATCCTGCCAGTCTGTGAGGA

Function

NR:

description
transcriptional adapter 3-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1698032 True 263 lncRNA 0.50 2 72846869 72852122

Neighbor

gene id symbol gene type direction distance location
LOC110494516 LOC105017315 coding upstream 18307 72818168 ~ 72828562 (+)
LOC110494513 LOC106565822 coding upstream 207772 72630322 ~ 72639097 (+)
LOC110494511 LOC106565826 coding upstream 225572 72586788 ~ 72621297 (+)
LOC110494512 LOC106565824 coding upstream 234071 72601325 ~ 72612798 (+)
LOC110494510 LOC106565827 coding upstream 261711 72547152 ~ 72585158 (+)
LOC110494520 LOC106565815 coding downstream 10237 72862359 ~ 72864606 (+)
LOC110494525 LOC106565811 coding downstream 192224 73044346 ~ 73049958 (+)
LOC110494536 LOC106565804 coding downstream 514680 73366802 ~ 73384379 (+)
LOC110494537 LOC106565802 coding downstream 543618 73395740 ~ 73416687 (+)
taf4a LOC106565801 coding downstream 592628 73444750 ~ 73457632 (+)
G1485070 NA non-coding upstream 48654 72797895 ~ 72798215 (+)
G1485065 NA non-coding upstream 55922 72790071 ~ 72790947 (+)
G1485006 NA non-coding upstream 153392 72689644 ~ 72693477 (+)
G1484985 NA non-coding upstream 171202 72660006 ~ 72675667 (+)
G1484943 NA non-coding upstream 302426 72544161 ~ 72544443 (+)
G1485196 NA non-coding downstream 170993 73023115 ~ 73036053 (+)
G1485233 NA non-coding downstream 235580 73087702 ~ 73087929 (+)
G1485238 NA non-coding downstream 242462 73094584 ~ 73094800 (+)
G1485257 NA non-coding downstream 267265 73119387 ~ 73119600 (+)
G1485258 NA non-coding downstream 267717 73119839 ~ 73120040 (+)
G1484897 NA other upstream 391945 72454563 ~ 72454924 (+)
G1484782 NA other upstream 541457 72304723 ~ 72305412 (+)
G1483638 NA other upstream 1464597 71381944 ~ 71382272 (+)
G1483346 LOC106565841 other upstream 1666440 71178513 ~ 71180429 (+)
LOC110494494 atxn7 other upstream 2005639 70809971 ~ 70847390 (+)
G1485260 NA other downstream 270704 73122826 ~ 73125356 (+)
G1485819 NA other downstream 429138 73281260 ~ 73282019 (+)
G1486811 NA other downstream 1126768 73978890 ~ 73979435 (+)
LOC110493252 LOC106565788 other downstream 1536414 74388428 ~ 74432420 (+)

Expression


Co-expression Network