XLOC_000034


Basic Information

Item Value
gene id XLOC_000034
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 1617203 ~ 1619314 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00003014
tgctgaagctgttccagagcaatacatacAAAATGACctctaggtgtcactgtagagacggGTTTAGAAACattgacacatttgcttcgactgtttcagtgtttcacaaagcctcgctttgcccaccactaactAGACAAGGGAACGTTAAGAAATATAACAgcaaaacaagactcagcaatgtgtgtgtgaatgtgaggtgtTTTCACAGTTGTGGAAATCAGTTCATCATGAGCTTCATGCTGTGTGTGAGCAATCAGAgagaatcaggaactggtgtgtgtgtgtgtgtgaggtgcatgatagtACATGTAGGCCAGTTCAGAGATTTgaagttctccagtgatctgctcAGGCTAGCTCGCTGATGGTTGTGACACATATCAAGACCTCATTATTCACACAGCCATTGTTCATGATCTAAATaggaaaattaaaaagcaaaaagacTTAATGATGAAATCTGATTAGTTTAATTAAAATCACTTCATCAGAGCATTAATGCAAAGGTTACACAGTTGCATAAACAGCATGCTTTATCAAATTCTGtgcaaagattttaaaaaatcaaacagAAATGAAACAGTTTTGTCCAAATAGTGGAAATATAAACAATTACCTGGACACAGAATTAGGTTAAAAATCCATCAATTCATGAAAATGATATAAAAGAAGAGATTCATTATGCAAAATTgctaaataaatgtgacttttttgtgtatatatatgtataaaatgcaaATAGAAAAGCTTTGTGTAAATATACTGGCCCGACCAGAAGAATCAGAagtaaaaatatgcaaaaatagaGATCTGCGGCTTAAAGGTGATTGTGAGTGTTTGGTCACGGCTCTGATGAATGTTACGAGTGTGTGTTATCTAGTGTCACTAATGAATGCAGATGATAAGCATATGCCGCTGTTAAGAGGACTAATATTACTggctgaatataataataattttcctgGTCCTGCCATTGATTCAAGGTAAACAGATGCTGATCTAACAATTCAGGATCAGTACACTGTATTACTGCAGCTCCACCagtgagtgcacacacacacacacacacgcacgcacgcacacacacacacacacacacacacacacacacacacacacacacacacacacacacgcacaggcacacacacacgcacacacacatgcacacacatgcacgcacacacacacaaacacacatttaagcACAAAACCACACatacttaacacacacacacacaaacgtttacacacaaatcacacacacacaaagaacacACACTTCACACTTacatacacaccacacacacgcacgcatgcatgcacgcacacacacacacacacacacacacaacatgcataacacacatttacacacacacacacacacacacacaacatgcataacacatttacacacgaaaccacacacaaattacacacacacacacacacacacacacacacacacacacacacacacacacacacacacgtcatgcTTAAACACACATTGACACATTAAaccatgcacacacaaacacactcacacactctcatacacaaacacaccacacatacacacatttactacacacatttatacacacaaacagtatacatacgtacATATACATACAAGCACCCCCcctcccacacaaacacacacacacacaaacacacacacacacacacacacgcgcacacagaTCCAGACTGTGATCTAGCAGCAGTTGTTTGTCTGGATATCGTGAACTATTTGATCTTCTTGGCGACGTCCAGGTAAGCGAACTGGATCTCTCGGTCAGCAGGGCAGGTGTTGATGAACTCCTCTCTCTGATAGGCTTTATTCAGATATCTCCAAATCCCGCTCATCTCTGCAGGAATCTCCAGGCCTCGGTACTTCCTAGCCACGAT
>TCONS_00003013
tgctgaagctgttccagagcaatacatacAAAATGACctctaggtgtcactgtagagacggGTTTAGAAACattgacacatttgcttcgactgtttcagtgtttcacaaagcctcgctttgcccaccactaactAGACAAGGGAACGTTAAGAAATATAACAgcaaaacaagactcagcaatgtgtgtgtgaatgtgaggtgtTTTCACAGTTGTGGAAATCAGTTCATCATGAGCTTCATGCTGTGTGTGAGCAATCAGAgagaatcaggaactggtgtgtgtgtgtgtgtgaggtgcatgatagtACATGTAGGCCAGTTCAGAGATTTgaagttctccagtgatctgctcAGGCTAGCTCGCTGATGGTTGTGACACATATCAAGACCTCATTATTCACACAGCCATTGTTCATGATCTAAATaggaaaattaaaaagcaaaaagacTTAATGATGAAATCTGATTAGTTTAATTAAAATCACTTCATCAGAGCATTAATGCAAAGGTTACACAGTTGCATAAACAGCATGCTTTATCAAATTCTGtgcaaagattttaaaaaatcaaacagAAATGAAACAGTTTTGTCCAAATAGTGGAAATATAAACAATTACCTGGACACAGAATTAGGTTAAAAATCCATCAATTCATGAAAATGATATAAAAGAAGAGATTCATTATGCAAAATTgctaaataaatgtgacttttttgtgtatatatatgtataaaatgcaaATAGAAAAGCTTTGTGTAAATATACTGGCCCGACCAGAAGAATCAGAagtaaaaatatgcaaaaatagaGATCTGCGGCTTAAAGGTGATTGTGAGTGTTTGGTCACGGCTCTGATGAATGTTACGAGTGTGTGTTATCTAGTGTCACTAATGAATGCAGATGATAAGCATATGCCGCTGTTAAGAGGACTAATATTACTggctgaatataataataattttcctgGTCCTGCCATTGATTCAAGGTAAACAGATGCTGATCTAACAATTCAGGATCAGTACACTGTATTACTGCAGCTCCACCagtgagtgcacacacacacacacacacgcacgcacgcacacacacacacacacacacacacacacacacacacacacacacacacacacacacgcacaggcacacacacacgcacacacacatgcacacacatgcacgcacacacacacaaacacacatttaagcACAAAACCACACatacttaacacacacacacacaaacgtttacacacaaatcacacacacacaaagaacacACACTTCACACTTacatacacaccacacacacgcacgcatgcatgcacgcacacacacacacacacacacacacaacatgcataacacacatttacacacgaaaccacacacaaattacacacacacacacacacacacacacacacacacacacacacacacacacacacacacgtcatgcTTAAACACACATTGACACATTAAaccatgcacacacaaacacactcacacactctcatacacaaacacaccacacatacacacatttactacacacatttatacacacaaacagtatacatacgtacATATACATACAAGCACCCCCcctcccacacaaacacacacacacacaaacacacacacacacacacacacgcgcacacagaTCCAGACTGTGATCTAGCAGCAGTTGTTTGTCTGGATATCGTGAACTATTTGATCTTCTTGGCGACGTCCAGGTAAGCGAACTGGATCTCTCGGTCAGCAGGGCAGGTGTTGATGAACTCCTCTCTCTGATAGGCTTTATTCAGATATCTCCAAATCCCGCTCATCTCTGCAGGAATCTCCAGGCCTCGGTACTTCCTAGCCACGAT
>TCONS_00003012
tgctgaagctgttccagagcaatacatacAAAATGACctctaggtgtcactgtagagacggGTTTAGAAACattgacacatttgcttcgactgtttcagtgtttcacaaagcctcgctttgcccaccactaactAGACAAGGGAACGTTAAGAAATATAACAgcaaaacaagactcagcaatgtgtgtgtgaatgtgaggtgtTTTCACAGTTGTGGAAATCAGTTCATCATGAGCTTCATGCTGTGTGTGAGCAATCAGAgagaatcaggaactggtgtgtgtgtgtgtgtgaggtgcatgatagtACATGTAGGCCAGTTCAGAGATTTgaagttctccagtgatctgctcAGGCTAGCTCGCTGATGGTTGTGACACATATCAAGACCTCATTATTCACACAGCCATTGTTCATGATCTAAATaggaaaattaaaaagcaaaaagacTTAATGATGAAATCTGATTAGTTTAATTAAAATCACTTCATCAGAGCATTAATGCAAAGGTTACACAGTTGCATAAACAGCATGCTTTATCAAATTCTGtgcaaagattttaaaaaatcaaacagAAATGAAACAGTTTTGTCCAAATAGTGGAAATATAAACAATTACCTGGACACAGAATTAGGTTAAAAATCCATCAATTCATGAAAATGATATAAAAGAAGAGATTCATTATGCAAAATTgctaaataaatgtgacttttttgtgtatatatatgtataaaatgcaaATAGAAAAGCTTTGTGTAAATATACTGGCCCGACCAGAAGAATCAGAagtaaaaatatgcaaaaatagaGATCTGCGGCTTAAAGGTGATTGTGAGTGTTTGGTCACGGCTCTGATGAATGTTACGAGTGTGTGTTATCTAGTGTCACTAATGAATGCAGATGATAAGCATATGCCGCTGTTAAGAGGACTAATATTACTggctgaatataataataattttcctgGTCCTGCCATTGATTCAAGGTAAACAGATGCTGATCTAACAATTCAGGATCAGTACACTGTATTACTGCAGCTCCACCagtgagtgcacacacacacacacacacgcacgcacgcacacacacacacacacacacacacacacacacacacacacacacacacacacacacgcacaggcacacacacacgcacacacacatgcacacacatgcacgcacacacacacaaacacacatttaagcACAAAACCACACatacacaccacacacacgcacgcatgcatgcacgcacacacacacacacacacacacacaacatgcataacacacatttacacacgaaaccacacacaaattacacacacacacacacacacacacacacacacacacacacacacacacacacacacacgtcatgcTTAAACACACATTGACACATTAAaccatgcacacacaaacacactcacacactctcatacacaaacacaccacacatacacacatttactacacacatttatacacacaaacagtatacatacgtacATATACATACAAGCACCCCCcctcccacacaaacacacacacacacaaacacacacacacacacacacacgcgcacacagaTCCAGACTGTGATCTAGCAGCAGTTGTTTGTCTGGATATCGTGAACTATTTGATCTTCTTGGCGACGTCCAGGTAAGCGAACTGGATCTCTCGGTCAGCAGGGCAGGTGTTGATGAACTCCTCTCTCTGATAGGCTTTATTCAGATATCTCCAAATCCCGCTCATCTCTGCAGGAATCTCCAGGCCTCGGTACTTCCTAGCCACGAT

Function

GO:

id name namespace
GO:0022401 negative adaptation of signaling pathway biological_process
GO:0099643 signal release from synapse biological_process
GO:0006898 receptor-mediated endocytosis biological_process
GO:0016079 synaptic vesicle exocytosis biological_process
GO:0045744 negative regulation of G protein-coupled receptor signaling pathway biological_process
GO:0048489 synaptic vesicle transport biological_process
GO:0002029 desensitization of G protein-coupled receptor signaling pathway biological_process
GO:0002031 G protein-coupled receptor internalization biological_process
GO:0036368 cone photoresponse recovery biological_process
GO:0007267 cell-cell signaling biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:0007269 neurotransmitter secretion biological_process
GO:0001505 regulation of neurotransmitter levels biological_process
GO:0050953 sensory perception of light stimulus biological_process
GO:0099177 regulation of trans-synaptic signaling biological_process
GO:0098916 anterograde trans-synaptic signaling biological_process
GO:0002088 lens development in camera-type eye biological_process
GO:0007601 visual perception biological_process
GO:0031623 receptor internalization biological_process
GO:0043112 receptor metabolic process biological_process
GO:0017156 calcium-ion regulated exocytosis biological_process
GO:0099504 synaptic vesicle cycle biological_process
GO:0023058 adaptation of signaling pathway biological_process
GO:0023061 signal release biological_process
GO:0099536 synaptic signaling biological_process
GO:0099537 trans-synaptic signaling biological_process
GO:0097479 synaptic vesicle localization biological_process
GO:0097480 establishment of synaptic vesicle localization biological_process
GO:0050804 modulation of chemical synaptic transmission biological_process
GO:0006836 neurotransmitter transport biological_process
GO:0045055 regulated exocytosis biological_process
GO:0099634 postsynaptic specialization membrane cellular_component
GO:0030672 synaptic vesicle membrane cellular_component
GO:0098839 postsynaptic density membrane cellular_component
GO:0043005 neuron projection cellular_component
GO:0030424 axon cellular_component
GO:0044456 obsolete synapse part cellular_component
GO:0005834 heterotrimeric G-protein complex cellular_component
GO:0045202 synapse cellular_component
GO:0012506 vesicle membrane cellular_component
GO:1905360 GTPase complex cellular_component
GO:0099501 exocytic vesicle membrane cellular_component
GO:0097458 obsolete neuron part cellular_component
GO:0098793 presynapse cellular_component
GO:0030658 transport vesicle membrane cellular_component
GO:0030659 cytoplasmic vesicle membrane cellular_component
GO:0000149 SNARE binding molecular_function
GO:0019905 syntaxin binding molecular_function
GO:0005212 structural constituent of eye lens molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00003014 False 1920 lncRNA 0.41 3 1617203 1619314
TCONS_00003013 False 1878 lncRNA 0.41 3 1617203 1619314
TCONS_00003012 True 1804 lncRNA 0.41 3 1617203 1619314

Neighbor

gene id symbol gene type direction distance location
XLOC_000033 urp2 coding upstream 2703 1599979 ~ 1614500 (+)
XLOC_000032 NA coding upstream 38952 1571847 ~ 1578251 (+)
XLOC_000031 NA coding upstream 256372 1358731 ~ 1360831 (+)
XLOC_000030 NA coding upstream 274966 1315289 ~ 1342237 (+)
XLOC_000029 CR450787.2 coding upstream 398398 1218691 ~ 1218805 (+)
XLOC_000035 atp1a1a.4 coding downstream 70461 1689775 ~ 1706159 (+)
XLOC_000036 atp1a1a.1 coding downstream 92826 1712140 ~ 1796832 (+)
XLOC_000037 atp1a1a.3 coding downstream 185980 1805294 ~ 1815660 (+)
XLOC_000038 atp1a1a.5 coding downstream 218850 1838164 ~ 1850104 (+)
XLOC_000039 si:ch211-132g1.6 coding downstream 277423 1896737 ~ 1899848 (+)
XLOC_000028 NA non-coding upstream 583565 1015812 ~ 1033638 (+)
XLOC_000043 NA non-coding downstream 382402 2001716 ~ 2005632 (+)
XLOC_000044 NA non-coding downstream 404095 2023409 ~ 2023645 (+)
XLOC_000049 CR352215.1 non-coding downstream 656291 2275605 ~ 2275742 (+)
XLOC_000051 CR352215.2 non-coding downstream 783789 2403103 ~ 2403224 (+)
XLOC_000053 NA non-coding downstream 2099352 3718666 ~ 3720603 (+)

Expression


Co-expression Network